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Report for CCDS52496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52496.1 Reviewed, update pending Mus musculus 8 Defb12 23 108 98 CCDS HistoryNCBI Gene:77674Re-query CCDS DB by CCDS ID:52496.1Re-query CCDS DB by GeneID:77674See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062113.7 ENSMUSP00000060899.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062113.7Link to Ensembl Protein Viewer:ENSMUSP00000060899.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062113Re-query CCDS DB by Protein ID:ENSMUSP00000060899
Original member NCBI NM_152802.3 NP_690015.1 Updated not alive Link to Nucleotide Sequence:NM_152802.3Link to Protein Sequence:NP_690015.1Re-query CCDS DB by Nucleotide ID:NM_152802Re-query CCDS DB by Protein ID:NP_690015
Current member NCBI NM_152802.4 NP_690015.2 Pending alive Link to Nucleotide Sequence:NM_152802.4Link to Protein Sequence:NP_690015.2Re-query CCDS DB by Nucleotide ID:NM_152802Re-query CCDS DB by Protein ID:NP_690015Link to BLAST:NP_690015.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690015.2 78 Q8K4N3 78 100% 0 0

Chromosomal Locations for CCDS 52496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19112657 19112781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19114327 19114368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19114730 19114820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGAAGAATCTCCCCTCAAACATGGCTCTGAGCAGAGAGGTGTTCTATTTTGGTTTTGCTTTGTTCTTCA
TTGTAGTTGAACTGCCATCAGGGTCCTGGGCAGGACTTGAGTATTCCCAGTCATTTCCAGGAGGGGAGAT
TGCTGTGTGCGAGACATGCAGGCTCGGCCGGGGAAAATGCAGGAGAACATGCATAGAGAGTGAGAAGATT
GCGGGCTGGTGCAAGCTGAACTTCTTCTGCTGTCGAGAGAGGATCTGA

Translation (85 aa):
MKNLPSNMALSREVFYFGFALFFIVVELPSGSWAGLEYSQSFPGGEIAVCETCRLGRGKCRRTCIESEKI
AGWCKLNFFCCRERI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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