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Report for CCDS52540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52540.1 Public Mus musculus 8 Mboat4 23 108 98 CCDS HistoryNCBI Gene:234155Re-query CCDS DB by CCDS ID:52540.1Re-query CCDS DB by GeneID:234155See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095345.4 ENSMUSP00000092988.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095345.4Link to Ensembl Protein Viewer:ENSMUSP00000092988.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095345Re-query CCDS DB by Protein ID:ENSMUSP00000092988
Original member NCBI NM_001126314.2 NP_001119786.1 Updated not alive Link to Nucleotide Sequence:NM_001126314.2Link to Protein Sequence:NP_001119786.1Re-query CCDS DB by Nucleotide ID:NM_001126314Re-query CCDS DB by Protein ID:NP_001119786
Current member NCBI NM_001126314.3 NP_001119786.1 Accepted alive Link to Nucleotide Sequence:NM_001126314.3Link to Protein Sequence:NP_001119786.1Re-query CCDS DB by Nucleotide ID:NM_001126314Re-query CCDS DB by Protein ID:NP_001119786Link to BLAST:NP_001119786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119786.1 435 P0C7A3 435 100% 0 0

Chromosomal Locations for CCDS 52540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 34115094 34115212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34120070 34120294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34123755 34124718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGATTGGCTCCAGCTCTTTTTTCTGCATCCTTTATCATTTTATCAAGGGGCTGCATTCCCCTTTGCGC
TTCTGTTTAATTATCTCTGCATCTTGGACACCTTTTCCACCCGGGCCAGGTACCTCTTTCTCCTGGCTGG
AGGAGGTGTCCTGGCTTTTGCTGCCATGGGTCCCTACTCTCTGCTCATCTTCATCCCTGCGCTCTGCGCT
GTGGCTCTGGTCTCCTTCCTCAGTCCACAGGAAGTCCATAGGCTGACCTTCTTCTTTCAGATGGGCTGGC
AGACCCTGTGCCATCTGGGTCTTCACTACACCGAATACTACCTGGGTGAGCCTCCACCCGTGAGGTTCTA
CATCACTCTTTCTTCCCTCATGCTCTTGACGCAGAGAGTCACATCCCTCTCACTGGACATTTGTGAAGGG
AAGGTGGAGGCCCCGAGGCGGGGCATCAGGAGCAAGAGTTCTTTCTCTGAGCACCTGTGGGATGCTCTAC
CTCATTTCAGCTACTTGCTCTTTTTCCCTGCTCTCCTGGGAGGCTCCCTGTGTTCCTTCCGGAGGTTTCA
GGCTTGCGTTCAAAGATCAAGCTCTTTGTATCCGAGTATCTCTTTTCGGGCTCTGACCTGGAGGGGTCTG
CAGATTCTCGGGCTGGAGTGCCTCAAGGTGGCGCTGAGGAGCGCGGTGAGTGCTGGAGCTGGACTGGATG
ACTGCCAGCGGCTGGAGTGCATCTACCTCATGTGGTCCACAGCCTGGCTCTTTAAACTCACCTATTACTC
CCATTGGATCCTGGACGACTCTCTCCTCCACGCGGCGGGCTTTGGCGCTGAGGCTGGCCAGGGGCCTGGA
GAGGAGGGATACGTCCCCGACGTGGACATTTGGACCCTGGAAACTACCCACAGGATCTCCCTGTTCGCCA
GGCAGTGGAACCGAAGCACAGCTCTGTGGCTCAGGAGGCTCGTCTTCCGGAAGAGCCGGCGCTGGCCCCT
GCTGCAGACATTTGCCTTCTCTGCCTGGTGGCACGGGCTCCACCCAGGTCAGGTGTTCGGCTTCCTGTGC
TGGTCTGTAATGGTGAAAGCCGATTATCTGATTCACACTTTTGCCAACGTATGTATCAGATCCTGGCCCC
TGCGGCTGCTTTATAGAGCCCTCACTTGGGCTCATACCCAACTCATCATTGCCTACATCATGCTGGCGGT
GGAGGGCCGGAGCCTTTCCTCTCTCTGCCAACTGTGCTGTTCTTACAACAGTCTCTTCCCTGTGATGTAC
GGTCTTTTGCTTTTTCTGTTAGCGGAGAGAAAAGACAAACGTAACTGA

Translation (435 aa):
MDWLQLFFLHPLSFYQGAAFPFALLFNYLCILDTFSTRARYLFLLAGGGVLAFAAMGPYSLLIFIPALCA
VALVSFLSPQEVHRLTFFFQMGWQTLCHLGLHYTEYYLGEPPPVRFYITLSSLMLLTQRVTSLSLDICEG
KVEAPRRGIRSKSSFSEHLWDALPHFSYLLFFPALLGGSLCSFRRFQACVQRSSSLYPSISFRALTWRGL
QILGLECLKVALRSAVSAGAGLDDCQRLECIYLMWSTAWLFKLTYYSHWILDDSLLHAAGFGAEAGQGPG
EEGYVPDVDIWTLETTHRISLFARQWNRSTALWLRRLVFRKSRRWPLLQTFAFSAWWHGLHPGQVFGFLC
WSVMVKADYLIHTFANVCIRSWPLRLLYRALTWAHTQLIIAYIMLAVEGRSLSSLCQLCCSYNSLFPVMY
GLLLFLLAERKDKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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