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Report for CCDS52576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52576.1 Public Mus musculus 8 Fkbp8 23 108 98 CCDS HistoryNCBI Gene:14232Re-query CCDS DB by CCDS ID:52576.1Re-query CCDS DB by GeneID:14232See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119353.8 ENSMUSP00000112527.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119353.8Link to Ensembl Protein Viewer:ENSMUSP00000112527.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119353Re-query CCDS DB by Protein ID:ENSMUSP00000112527
Original member Current member NCBI NM_010223.2 NP_034353.2 Accepted alive Link to Nucleotide Sequence:NM_010223.2Link to Protein Sequence:NP_034353.2Re-query CCDS DB by Nucleotide ID:NM_010223Re-query CCDS DB by Protein ID:NP_034353Link to BLAST:NP_034353.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034353.2 402 O35465-1 402 100% 0 0

Chromosomal Locations for CCDS 52576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70529414 70529675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70530940 70531109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70531185 70531273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70531525 70531742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70532577 70532749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70534117 70534194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70534483 70534614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70534867 70534953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGCGTCTTGGGCTGAGCCCTCTGAGCCTGCTGCCCTGCGACTTCCTGGGGCCCCACTGCTGGAGGGCT
TTGAGGTGCTCGATGGGGTTGATGATGCAGAGGAGGAAGATGACCTAAGTGGGCTGCCACCACTAGAGGA
CATGGGACAGCCTACAGTGGAGGAGGCTGAGCAGCCTGGAGCCCTGGCTCGGGAGTTCCTGGCAGCCACA
GAGCCTGAGCCAGCCCCAGCCCCAGCCCCGGAAGAGTGGCTGGACATTCTGGGGAACGGATTGCTGCGGA
TGAAGACACTGGTCCCAGGCCCGAAAGGCTCTAGCCGCCCACTCAAGGGCCAGGTGGTGACCGTTCACCT
GCAGATGTCCCTGGAGAATGGCACCCGTGTACAGGAAGAGCCTGAACTGGCCTTCACGCTGGGAGACTGC
GATGTTATCCAGGCCCTGGACCTCAGTGTCCCGCTCATGGATGTGGGCGAGACAGCCATGGTTACCGCTG
ACTCCAAGTACTGCTACGGCCCCCAGGGCAGGAGCCCATACATCCCCCCCCACGCAGCCCTGTGCCTGGA
AGTCACCCTGAAGACGGCAGAGGATGGACCCGACCTGGAGATGCTGAGTGGGCAGGAGCGCGTGGCCCTG
GCCAACCGCAAGCGGGAGTGTGGCAATGCCCACTACCAGCGTGCCGACTTTGTGCTGGCCGCCAATTCCT
ATGACCTGGCCATCAAGGCTATCACCTCCAACACCAAAGTGGACATGACTTGTGAGGAGGAAGAGGAGCT
GCTACAGCTGAAGGTCAAGTGTCTGAACAACCTTGCGGCCTCACAGCTGAAGCTGGACCACTACCGAGCA
GCTCTGCGCTCCTGTAGCCAGGTGCTGGAGCACCAGCCGGACAACATCAAGGCACTGTTCCGCAAGGGCA
AGGTGCTGGCTCAGCAAGGTGAATATAGTGAGGCCATCCCAATCCTGAGGGCTGCCCTGAAGCTGGAACC
TTCCAACAAGACGATCCACGCAGAGCTCTCAAAGCTGGTAAAGAAGCGTGCTGCACAGCGGAGCACAGAG
ACCGCCCTGTACCGAAAGATGCTAGGCAACCCCAGCCGGCTGCCTGCCAAGTGTCCGGGAAAGGGGGCCT
GGTCCATCCCGTGGAAATGGCTGTTTGGGGCGACTGCCGTGGCCCTGGGGGGCGTGGCTCTCTCTGTGGT
CATTGCTGCCAGGAACTGA

Translation (402 aa):
MASWAEPSEPAALRLPGAPLLEGFEVLDGVDDAEEEDDLSGLPPLEDMGQPTVEEAEQPGALAREFLAAT
EPEPAPAPAPEEWLDILGNGLLRMKTLVPGPKGSSRPLKGQVVTVHLQMSLENGTRVQEEPELAFTLGDC
DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAEDGPDLEMLSGQERVAL
ANRKRECGNAHYQRADFVLAANSYDLAIKAITSNTKVDMTCEEEEELLQLKVKCLNNLAASQLKLDHYRA
ALRSCSQVLEHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKRAAQRSTE
TALYRKMLGNPSRLPAKCPGKGAWSIPWKWLFGATAVALGGVALSVVIAARN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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