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Report for CCDS52578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52578.1 Public Mus musculus 8 Kcnn1 23 108 98 CCDS HistoryNCBI Gene:84036Re-query CCDS DB by CCDS ID:52578.1Re-query CCDS DB by GeneID:84036See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110078.4 ENSMUSP00000105705.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110078.4Link to Ensembl Protein Viewer:ENSMUSP00000105705.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110078Re-query CCDS DB by Protein ID:ENSMUSP00000105705
Original member Current member EBI ENSMUST00000212611.1 ENSMUSP00000148544.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212611.1Link to Ensembl Protein Viewer:ENSMUSP00000148544.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212611Re-query CCDS DB by Protein ID:ENSMUSP00000148544
Original member NCBI NM_001363407.1 NP_001350336.1 Updated not alive Link to Nucleotide Sequence:NM_001363407.1Link to Protein Sequence:NP_001350336.1Re-query CCDS DB by Nucleotide ID:NM_001363407Re-query CCDS DB by Protein ID:NP_001350336
Current member NCBI NM_001363407.2 NP_001350336.1 Accepted alive Link to Nucleotide Sequence:NM_001363407.2Link to Protein Sequence:NP_001350336.1Re-query CCDS DB by Nucleotide ID:NM_001363407Re-query CCDS DB by Protein ID:NP_001350336Link to BLAST:NP_001350336.1
Original member NCBI NM_032397.3 NP_115773.2 Updated not alive Link to Nucleotide Sequence:NM_032397.3Link to Protein Sequence:NP_115773.2Re-query CCDS DB by Nucleotide ID:NM_032397Re-query CCDS DB by Protein ID:NP_115773
Current member NCBI NM_032397.4 NP_115773.2 Accepted alive Link to Nucleotide Sequence:NM_032397.4Link to Protein Sequence:NP_115773.2Re-query CCDS DB by Nucleotide ID:NM_032397Re-query CCDS DB by Protein ID:NP_115773Link to BLAST:NP_115773.2

Chromosomal Locations for CCDS 52578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70844316 70844561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70846495 70846564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70846764 70846772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70848175 70848302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70848778 70848888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70850600 70850741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70852654 70853072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70854627 70854722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70855001 70855396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGAGTAGCCACAGCCACAATGGCAGCGTGGGGCAGCCTCTGGGCAGCGGGCCTGGATTCCTGGGCTGGG
AGCCTGTGGACCCTGAGGCAGGCCGCCCCCTGCAGCCCACCCAAGGCCCAGGCCTGCAGATGGTGGCCAA
GGGTCAGCCTGTCAGGCTGTCACCCGGTGGTTCCAGGGGCCACCCCCAGGAGCAGGAGGAGGAAGAGGAA
GAGGAGGAGGAGGAGGAGGACAAGACAGGCTCAGGGAAGCCCCCAACAGTCAGCCACCGCCTGGGACACC
GCAGGGCCCTCTTTGAAAAGCGTAAACGGCTCAGTGACTATGCGCTCATCTTTGGCATGTTTGGGATTGT
CGTCATGGTGACAGAAACAGAGCTGTCCTGGGGTGTATACACCAAGGAGTCACTCTGCTCTTTTGCTCTG
AAATGCCTCATCAGCCTGTCCACTGTCATCTTGCTTGGCCTTGTCATCCTGTACCACGCCCGAGAGATCC
AGCTGTTCTTGGTGGACAATGGTGCCGACGACTGGCGTATCGCCATGACGTGGGAGCGCGTGTCCCTGAT
CTCGCTGGAGTTGGTCGTGTGTGCCATCCACCCGGTGCCCGGCCACTATCGCTTCACGTGGACGGCACGA
CTGGCCTTCTCTCTGGTGCCGTCGGCAGCCGAGGCAGACCTGGATGTGCTGCTGTCCATCCCCATGTTCC
TGCGCCTCTACCTGCTGGCTCGGGTCATGCTCCTGCACAGCCGCATCTTCACCGATGCATCCAGCCGCAG
CATCGGGGCCCTTAACCGCGTCACCTTCAACACACGCTTCGTCACCAAGACGCTCATGACCATCTGCCCC
GGCACTGTGTTGTTGGTCTTCAGCGTCTCCTCCTGGATCGTTGCTGCGTGGACAGTGCGCGTGTGTGAGA
GGTACCACGATAAGCAGGAAGTGACCAGCAACTTCCTGGGAGCCATGTGGCTCATCTCCATCACCTTCTT
GTCCATTGGCTATGGAGACATGGTGCCGCATACCTACTGTGGGAAGGGTGTGTGTCTGCTCACTGGCATC
ATGGGAGCAGGCTGCACTGCACTCGTGGTGGCCGTCGTGGCTCGGAAGTTGGAACTCACCAAGGCTGAGA
AACACGTGCACAACTTCATGATGGACACACAGCTCACCAAGCGGGTCAAAAATGCTGCTGCAAACGTTCT
CAGGGAGACATGGCTCATCTACAAACACACCAGGCTGGTGAAGAAGCCAGACCAAGGCCGGGTTCGGAAA
CACCAGCGTAAGTTCCTTCAGGCCATCCATCAGGCTCAGAAGCTCCGAAGTGTGAAGATTGAACAAGGGA
AGGTGAACGATCAGGCCAACACGCTGGCTGAGCTGGCCAAGGCACAGAGCATCGCATATGAGGTGGTGTC
AGAGCTGCAGGCCCAGCAGGAGGAGTTGGAGGCACGCCTAGCCGCCTTGGAGAGCCGACTGGATGTCCTG
GGTGCCTCCCTGCAGGCTCTACCAGGCCTTATAGCCCAAGCCATATGCCCTCTACCACCACCCTGGCCTG
GGCCTGGTCACCTGGCCACAGCCACCCAGAGCCCACAAAGCCACTGGCTGCCCACCATGGGATCAGACTG
TGGGTGA

Translation (538 aa):
MSSHSHNGSVGQPLGSGPGFLGWEPVDPEAGRPLQPTQGPGLQMVAKGQPVRLSPGGSRGHPQEQEEEEE
EEEEEEDKTGSGKPPTVSHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLCSFAL
KCLISLSTVILLGLVILYHAREIQLFLVDNGADDWRIAMTWERVSLISLELVVCAIHPVPGHYRFTWTAR
LAFSLVPSAAEADLDVLLSIPMFLRLYLLARVMLLHSRIFTDASSRSIGALNRVTFNTRFVTKTLMTICP
GTVLLVFSVSSWIVAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGI
MGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQGRVRK
HQRKFLQAIHQAQKLRSVKIEQGKVNDQANTLAELAKAQSIAYEVVSELQAQQEELEARLAALESRLDVL
GASLQALPGLIAQAICPLPPPWPGPGHLATATQSPQSHWLPTMGSDCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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