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Report for CCDS52728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52728.1 Public Mus musculus 9 Naalad2 23 108 98 CCDS HistoryNCBI Gene:72560Re-query CCDS DB by CCDS ID:52728.1Re-query CCDS DB by GeneID:72560See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166825.7 ENSMUSP00000128674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166825.7Link to Ensembl Protein Viewer:ENSMUSP00000128674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166825Re-query CCDS DB by Protein ID:ENSMUSP00000128674
Original member Current member NCBI NM_028279.4 NP_082555.2 Accepted alive Link to Nucleotide Sequence:NM_028279.4Link to Protein Sequence:NP_082555.2Re-query CCDS DB by Nucleotide ID:NM_028279Re-query CCDS DB by Protein ID:NP_082555Link to BLAST:NP_082555.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082555.2 740 Q9CZR2 740 100% 0 0

Chromosomal Locations for CCDS 52728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 18323434 18323623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18326176 18326268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18327364 18327445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18330635 18330899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18334928 18335018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18339391 18339482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18347454 18347521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18348850 18348913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18350850 18350932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18351036 18351155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18351410 18351495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18363142 18363240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18364121 18364214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18376423 18376609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18378608 18378733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18379912 18380013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18380795 18380981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18385045 18385156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18385793 18385874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGGCAAGGCCTAGGCATCTCCGTGGCTTGGGAATGTGCATTACCGCGGTGCTGGCCTCCTTCATCGCTG
GCTTTACTGTGGGCTGGTTTATTAAGCCTCTCAAAGAAACAACTACTTCTGCTGGTTATCATCAAAGTAT
ACAACAGAAACTCCTATCTGAAATGAAAGCTGAAAACATTAGATCATTTCTTCGTTCCTTTACAAAACTT
CCCCATCTGGCAGGAACGGAACAAAATTTACTTCTTGCCAAGAAAATCCAAACACAGTGGAAGAAATTTG
GATTAGATTCAGCTAACCTGGTTCATTACGATGTTCTCTTGTCTTATCCAAATGAGACCAATGCAAACTA
TGTATCCATTGTGGATGAGCATGGAGTTGAGATTTTTAAAACATCATACCTTGAACCACCACCAGATGGA
TATGAGAATGTTACAAACATCATACCACCATACAATGCGTTTTCAGCCAGCGGCATGCCGGAGGGAGAGC
TTGTGTATGTCAACTACGCTCGTACTGAGGACTTCTTCAAACTAGAAAGAGAAATGAACATCAACTGCAC
TGGCAAGATTGTTATCGCAAGATATGGGAAGATCTTTAGAGGAAACAAAGTCAAAAATGCCATGCTAGCT
GGGGCCATGGGAATCATTCTGTACTCTGATCCAGCTGACTACTTTGCCCCTGATGTGCAGCCATATCCCA
AAGGATGGAACCTTCCTGGAGCTGCAGCTCAGAGAGGAAATGTCTTAAATCTGAATGGGGCAGGTGACCC
ACTCACTCCAGGCTATCCAGCTAAAGAATACACCTTCAGACTTCCTGTTGAAGAAGCAGTGGGGATTCCA
AACATACCTGTACATCCTATTGGATATAATGATGCAGAGAGACTATTACGCAACTTGGGAGGAGCTGCTC
CACCAGACAAAAGCTGGAAGGGAAGTCTAAATGTCAGTTACAATATTGGGCCTGGCTTTACAGGAAGTGA
ATATTCCAGGAACATTAGAATGCATGTTAATAACATTAACAAAATCACAAGAATTTACAATGTAATTGGA
ACTATCAGAGGGTCTACAGAACCTGACAGGTATGTCATTCTCGGAGGTCATCGTGACTCCTGGGTGTTTG
GAGGGATTGACCCTACCACTGGGACAGCAGTTTTGCAAGAGATTGCGCGAAGTTTTGGGAAACTTGTGAA
TGGAGGTTGGAGACCTAGGAGAACTATCATTTTTGCCAGCTGGGATGCAGAGGAGTTTGGGCTGCTGGGG
TCAACTGAATGGGCTGAAGAGAATGCAAAGCTCCTACAGGAGAGAAGCATTGCTTACATCAACTCAGATT
CTGCTATAGAAGGTAATTACACTCTTCGAGTTGATTGTACTCCTCTTCTAAACCAGCTGGTTTACAAAGT
GGCAAGAGAGATCTCCAGTCCTGATGATGGTTTTGAAAGTAAATCACTTTATGAAAGCTGGCTGGAAAAA
GACCCTTCACCTGAAAATAAAGAGTGTCCTAGAATCAATAAGCTTGGATCTGGGAGTGATTTTGAGGCTT
ACTTCCAAAGACTTGGAATTGCTTCAGGCAGAGCTCGCTACACTAAGAACAAGAAAACAGATAAATACAG
TAGCTATCCTGTATATCATACCATCTATGAGACGTTTGAATTAGTACAGAACTTTTATGACCCCACATTT
AAAAAGCAACTGTCTGTGGCTCAGTTACGAGGAGCATTGGTATATGAGCTTGCAGACTCTGTGGTCATTC
CTTTCAACATTCAAGACTATGCAAAAGCCTTGAAAAACTATGCAGCAAGTATTTTCAACATATCCAAGAA
ACACGACCAGCAATTGAGAAACCATGCAGTGTCATTTGATCCCTTATTTTCTGCTGTGAAAAACTTTTCG
GAGGCTGCTTCAGATTTTCACAGAAGACTTACACAAGTTGATCTTAATAATCCTATTGCAGTGAGAATTA
TGAATGACCAGCAGATGCTTCTTGAAAGAGCATTCATAGATCCTCTTGGTTTACCTGGGAGGAAGTTCTA
CAGGCACATCATCTTTGCTCCAAGCAGCCACAACAAATATGCCGGAGAATCATTCCCTGGGATTTATGAT
GCCATGTTTGATATTGAAAATAAGGCAGACCCTTCCTTGGCCTGGGCAGAAGTGAAGAAACATATTTCTA
TTGCAGCTTTTACAATTCAGGCAGCAGCGGGGACACTGACCAATGTGTTATAG

Translation (740 aa):
MARPRHLRGLGMCITAVLASFIAGFTVGWFIKPLKETTTSAGYHQSIQQKLLSEMKAENIRSFLRSFTKL
PHLAGTEQNLLLAKKIQTQWKKFGLDSANLVHYDVLLSYPNETNANYVSIVDEHGVEIFKTSYLEPPPDG
YENVTNIIPPYNAFSASGMPEGELVYVNYARTEDFFKLEREMNINCTGKIVIARYGKIFRGNKVKNAMLA
GAMGIILYSDPADYFAPDVQPYPKGWNLPGAAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLPVEEAVGIP
NIPVHPIGYNDAERLLRNLGGAAPPDKSWKGSLNVSYNIGPGFTGSEYSRNIRMHVNNINKITRIYNVIG
TIRGSTEPDRYVILGGHRDSWVFGGIDPTTGTAVLQEIARSFGKLVNGGWRPRRTIIFASWDAEEFGLLG
STEWAEENAKLLQERSIAYINSDSAIEGNYTLRVDCTPLLNQLVYKVAREISSPDDGFESKSLYESWLEK
DPSPENKECPRINKLGSGSDFEAYFQRLGIASGRARYTKNKKTDKYSSYPVYHTIYETFELVQNFYDPTF
KKQLSVAQLRGALVYELADSVVIPFNIQDYAKALKNYAASIFNISKKHDQQLRNHAVSFDPLFSAVKNFS
EAASDFHRRLTQVDLNNPIAVRIMNDQQMLLERAFIDPLGLPGRKFYRHIIFAPSSHNKYAGESFPGIYD
AMFDIENKADPSLAWAEVKKHISIAAFTIQAAAGTLTNVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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