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Report for CCDS52765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52765.1 Public Mus musculus 9 Pate11 23 108 98 CCDS HistoryNCBI Gene:671003Re-query CCDS DB by CCDS ID:52765.1Re-query CCDS DB by GeneID:671003See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165591.3 ENSMUSP00000129404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165591.3Link to Ensembl Protein Viewer:ENSMUSP00000129404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165591Re-query CCDS DB by Protein ID:ENSMUSP00000129404
Original member Current member NCBI NM_001128510.2 NP_001121982.1 Accepted alive Link to Nucleotide Sequence:NM_001128510.2Link to Protein Sequence:NP_001121982.1Re-query CCDS DB by Nucleotide ID:NM_001128510Re-query CCDS DB by Protein ID:NP_001121982Link to BLAST:NP_001121982.1

Chromosomal Locations for CCDS 52765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36475638 36475698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36476481 36476594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36477056 36477180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGGAAAGCACGTCTTGCAGCTCCTGCTGGTCCTGTCTTTGCTGGTGATGTCCCTGCAAGCTTTGACAT
GTATCACATGTGATAGGATGAATTCTCGGAGAATTTGTGAGGGGAAAGAAGGTTGCTGTCAGGCTAGACC
TGGAGAGAAGTGTGCCTCGTTCATAACCCTTAAAGATGGCAAAATTCAGTTTGGAAGCCAGAGATGTGCT
GACCTTTGCTTCACTGGGACTGTTATGATTGGAGATAAGACAGTAAAAATGAACTGTTGCAACAACAAAT
CTTTCTGCAATAAACTATAA

Translation (99 aa):
MGKHVLQLLLVLSLLVMSLQALTCITCDRMNSRRICEGKEGCCQARPGEKCASFITLKDGKIQFGSQRCA
DLCFTGTVMIGDKTVKMNCCNNKSFCNKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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