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Report for CCDS52824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52824.1 Public Mus musculus 9 Tle3 23 108 98 CCDS HistoryNCBI Gene:21887Re-query CCDS DB by CCDS ID:52824.1Re-query CCDS DB by GeneID:21887See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034820.15 ENSMUSP00000034820.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034820.15Link to Ensembl Protein Viewer:ENSMUSP00000034820.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000034820Re-query CCDS DB by Protein ID:ENSMUSP00000034820
Original member Current member NCBI NM_001083928.1 NP_001077397.1 Accepted alive Link to Nucleotide Sequence:NM_001083928.1Link to Protein Sequence:NP_001077397.1Re-query CCDS DB by Nucleotide ID:NM_001083928Re-query CCDS DB by Protein ID:NP_001077397Link to BLAST:NP_001077397.1

Chromosomal Locations for CCDS 52824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 61373438 61373461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61373953 61374053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61374515 61374578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61375529 61375573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61393203 61393265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61394608 61394682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61401853 61402057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61403452 61403468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61407354 61407473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61408280 61408330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61408766 61408918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61409275 61409407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61409936 61410120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61411263 61411339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61412265 61412514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61412855 61413102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61413943 61414090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61414711 61414861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61415562 61415638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61416609 61416716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2295 nt):
ATGTATCCGCAAGGCAGACATCCGGCACCCCATCAACCCGGGCAGCCGGGATTTAAATTCACTGTGGCCG
AGTCCTGTGACAGGATCAAAGACGAATTCCAGTTCCTGCAAGCTCAGTATCACAGCCTCAAAGTGGAGTA
TGACAAGCTGGCTAACGAGAAGACGGAGATGCAGCGCCATTATGTGATGTACTATGAGATGTCCTATGGC
TTGAATATTGAAATGCACAAGCAGACAGAGATTGCGAAGAGACTGAACACAATCCTAGCCCAGATCATGC
CTTTTTTGTCACAGGAGCATCAGCAGCAAGTGGCGCAGGCTGTGGAACGCGCCAAGCAGGTCACCATGAC
GGAGTTGAACGCCATCATCGGGCAGCAGCAACTCCAGGCCCAGCACCTCTCCCATGCCACGCATGGTCCC
CCGGTCCAGCTGCCACCCCACCCGTCAGGCCTCCAGCCTCCTGGGATTCCCCCAGTGACAGGAAGCAGCT
CTGGGTTGCTGGCACTTGGTGCCCTGGGAAGTCAAGCTCACTTGGCGGTGAAGGATGAGAAGAACCACCA
TGAACTGGATCACAGAGAGAGAGAGTCCAGCACGAACAATTCCGTGTCACCCTCTGAAAGCCTCCGGGCC
AGTGAGAAGCACCGGGGCTCTGCAGACTACAGCATGGAAGCCAAGAAGCGGAAGGCGGAAGAGAAAGACA
GCCTCAGCAGATACGATAGCGATGGGGACAAGAGTGACGACCTGGTGGTGGATGTCTCTAATGAGGACCC
AGCAACACCCCGGGTGAGCCCAGCACACTCCCCTCCTGAAAATGGGCTGGACAAAGCCCGTGGTCTGAAG
AAAGATGCCCCCACCAGCCCAGCCTCCGTGGCTTCCTCCAGCAGCACACCTTCCTCCAAGACCAAAGACC
TTGGTCATAATGACAAATCTTCCACACCTGGGCTCAAGTCCAACACACCAACGCCAAGAAATGATGCCCC
AACTCCAGGCACCAGCACCACCCCGGGGCTCCGGTCAATGCCGGGCAAACCTCCAGGCATGGACCCGATA
GCCTCGGCCCTGCGAACACCCATCACCCTCACCAGCTCCTATCCAGCACCCTTTGCCATGATGAGCCACC
ACGAGATGAATGGCTCCCTCACCAGCCCAAGCGCCTATGCTGGCCTACACAACATCCCATCCCAGATGAG
CGCCGCCGCAGCCGCTGCAGCCGCCGCCTATGGCCGATCGCCAATGGTTGGTTTTGACCCTCACCCCCCA
ATGAGGGCCACAGGCCTGCCTTCCAGTCTCGCCTCCATTCCTGGAGGGAAACCGGCATACTCCTTCCATG
TGAGTGCTGATGGGCAGATGCAACCTGTGCCCTTCCCCCATGATGCACTAGCAGGCCCTGGCATTCCCAG
GCATGCCCGGCAGATCAATACGCTCAGCCATGGAGAGGTGGTATGTGCTGTGACCATCAGCAACCCCACA
CGACACGTCTACACAGGCGGCAAGGGCTGTGTGAAGATATGGGACATCAGCCAGCCGGGCAGCAAGAGTC
CCATCTCCCAGCTGGACTGCCTGAACAGGGACAACTACATCCGCTCGTGCAAGCTTCTCCCCGATGGGCG
CACGCTCATTGTGGGTGGTGAGGCCAGCACGCTCACCATCTGGGACCTGGCCTCACCCACACCCCGCATC
AAGGCTGAGCTGACGTCCTCGGCTCCAGCCTGTTATGCCCTGGCCATCAGTCCTGATGCCAAAGTCTGTT
TTTCCTGCTGCAGCGACGGGAACATTGCGGTTTGGGATCTGCACAACCAGACCCTGGTCAGGCAGTTCCA
GGGCCACACAGATGGGGCCAGCTGTATAGACATCTCTCATGATGGCACTAAGCTGTGGACCGGGGGCCTG
GACAACACCGTGCGCTCCTGGGACCTACGTGAAGGACGGCAGTTACAGCAACACGATTTCACCTCCCAGA
TCTTCTCCCTGGGTTACTGCCCCACTGGGGAGTGGCTGGCCGTGGGCATGGAGAGCAGCAATGTGGAGGT
CCTGCACCACACTAAGCCCGACAAATACCAGCTGCACCTGCACGAGAGCTGCGTGCTGTCCCTCAAGTTC
GCCTATTGTGGCAAGTGGTTTGTGAGCACTGGGAAAGACAACCTTCTCAATGCCTGGAGGACGCCTTATG
GAGCCAGCATCTTCCAGTCAAAAGAATCCTCATCTGTCTTGAGCTGTGACATTTCAGCGGATGACAAATA
TATTGTAACAGGCTCTGGTGACAAGAAGGCCACAGTTTACGAGGTCATCTACTGA

Translation (764 aa):
MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYG
LNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGP
PVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRA
SEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLK
KDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPI
ASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAAAAAAAAYGRSPMVGFDPHPP
MRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPT
RHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRI
KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGL
DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKF
AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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