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Report for CCDS52831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52831.1 Public Mus musculus 9 Iqch 23 108 98 CCDS HistoryNCBI Gene:78250Re-query CCDS DB by CCDS ID:52831.1Re-query CCDS DB by GeneID:78250See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163982.7 ENSMUSP00000126546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163982.7Link to Ensembl Protein Viewer:ENSMUSP00000126546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163982Re-query CCDS DB by Protein ID:ENSMUSP00000126546
Original member Current member NCBI NM_030068.2 NP_084344.1 Accepted alive Link to Nucleotide Sequence:NM_030068.2Link to Protein Sequence:NP_084344.1Re-query CCDS DB by Nucleotide ID:NM_030068Re-query CCDS DB by Protein ID:NP_084344Link to BLAST:NP_084344.1

Chromosomal Locations for CCDS 52831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 63421835 63421969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63425358 63425466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63429013 63429074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63445474 63445509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63454560 63454730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63480508 63480794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63482567 63482687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63496044 63496235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63500865 63501137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63508246 63508421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63512237 63512320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63523905 63523971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63524696 63525247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63534337 63534375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63536235 63536314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63544797 63544925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63547898 63548018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63572612 63572728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63588330 63588441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63594176 63594267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63594746 63594868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63602367 63602417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGCGCAGGCCCAGGAGGACAGCGACCCCATTGGATCCATCCTAATCCAGGTTCATGAGGACCTTCATC
AGTTAAAGGAAAAATTAGTAAAATTCTCAGCCGAGGAGACAAGGAGCACTCTAGACATTCAAAATCTTGA
GACAGCAATCCAAAGGACTGAAATGGGGTTAAAGATTCACATCGACAAGTATCTAGGTGTTGTAAACCAG
GAGGTGTTAATGGCTCCTGTGAAGAAAAGCTTGGAATCCCCTGTCACTTCCAAATGGTCGATTCCAACTG
TAATTGACCAGAAATCCTTTATTTTCCCCATGGATTCTGATTTTTGGCGACCTCAAAAGCATCGCGGTTC
ATTGCTACACGGCCTTAGAAGAGCAAAGCCAAAGATACAGTTGACTACGAAGGTCATGCAGGACCCTGAG
AACAAGCACCACAGGGCTGCTGTAACTGCTAGCTATGGGATCAGTTTGCCACATATTAACCAGAGGAAAG
CCCAGGATAAGGTTCAGCGGTTAATAAAAGGGTCCACGATCTCCAACCTCACAGTTCTGCCACCCTCTCA
TCGCACTGACCCCCATTTTATCCCCATACCTGTCTTGCAGAAGGATGCCAGTAAAGGCGTCTTAAGTATG
ATTGAGCGAGGGCTGATCCCCCCAACAGCGAGGATTACCTTTCAGAACCCACCCATTAAACCCCAAGCAC
TTCCTCTGCACAGTTTTGATGAGCATCGTAAGGTACCCATGGAAGCCTCCTTTCCTCTCGCTCTCAAGCC
ACGCCCAGTTCCTGAAGAAGTGGAGGAGCCTTCTCACCAGATAGAAATACCCAAGGGGAGAGCCAAAAGG
TCAAGAGGACCGCTCAGAAGAAAGGGCATGAAGATTAGGACACCGTCTAAGACTAGGAAATCACCATGGG
ATTATATATTTTCTGTTTACAACGGCTGTGTAGACAGGACAGCCCCAGACTTCTTAGCATTCAAATCACG
CTTCAAATTAATCTGGGGGAGTATTTTTTCTTTCCTGGAACAAATTGAGAAATTTCTCAAGGACTATGCA
ATATCTGAAGCCAAAATAAAAGGGAAGAGTCTGGTGTCCCTGCTTCCAGAGTTTGAGCTGAAGAACAAAT
TAACCAGAAATGATGTTCTGGCTGTGTTAGAGAACCCAGTTCACATTCAGATGCTGTTAAACCTTCCGGG
ACAGAGGTACAAGGGCCAAGATGGAAAGGCAGAAGCTGCCACCAAGATCCAAGCCACGTGGAAAAGTTAC
AAGGCAAGATCTTCTTTCATTTCTTATCGCCAGAAGAAATGGGCCTCAGGTGTGATCGCCCTGGCGTGGC
TTTTACATTGCCACAGGACAAGACTAAAGAGGATAGTGAAGGAATCCCGACAGAGACACCTGGAGAACTT
CCGCATTCGAGCCCAGCATCTGGCAGCCAACTGGAGTCGCATCAGGACCTCCAGGAGGACTATTATCCAT
ATACCATCATTAGGGTACTCCCAGTATGTGAGAAAACACATTTTTGATTTGGACGTAGAACAGAACATGC
AGTTGGGGAGGCTGTGCGACATCATAGATGCCAACGTCAATGTCATCTACATCTGTTCCCATCCTATGAC
GGATGAGTTAAAGCTGTACTACAGGAAACTCCTGAGTCTACAAGCAGCTGTCAAAACGGGGTACTACGGG
GATCGGACTGACCTGCAGAACAGGTTCAGAATTATCACCCCTGAAGCTGTAAACGTCTTCACTAAGCATC
ACATGTGCCTGGCCACTCACCTGATGTACAGTCCCAAGGCAATCAAAAGAATAAAAAATCTCATCCGAGG
AGAAGAGGCCTACATCGTGGGCGGGATCCTCCACAGAGACGACTTAGCTGTGGCCGATATGCTGAATGTC
CCCATCCTGGGCTCAGAGCCTGAGCTGGTTCACCTGTACAGTGCCAAGTCTGGAAGCAAGCGGATCTTTG
ATAATGCTAATGTGCCAATGCCTCCTGGAATATATGACATCTATACTTACCAACAGATGATAGAACAGTT
GAGCCAGTTGGTGACTGATAACCTGGGAATCCGACGCTGGGTCTTTAAAATGAACACGGAATTTGGAGGA
AATGGGACAGCATTTTGTGACATTCCTTCCCATCTACAGTGCTACAACTGGGTGCTGAAGGAAAGAAACA
GATTTGGCCATGAGGACTGGAAGAAGAAGTGGGCACAAGAGTCAGCTCTGGTGAAGATCTCCGAGGAGCT
GGCGGGCATTTTAGCACAGCACGTACAGCTAGTCAATGAGAAACGGTTCCCGACGTGGAGGAAATTCCTC
CACATGTTTCTCACTCAAGGTGGCGTGATTGAAGCATACCCACCTGCAGACAGCGTCACCAACCTCACAG
TAGACATGCTGATAGAACCTGATGGAGAAGTCAGGGTGCTGTCAATGGGAGACCAGCTTCATGCTGATGG
CCCCTTTATTTCTTCTGGTACCACCATGCCTCAGACCTCAGTGGATCCCCAAGTTCTCAATTCTTTGTGC
CTCCAAATTGGAAATATCTGCAAAGAGAAAGATGTGGTTGGTTATTTTTCTATAGATCTGGTGACTTTCA
TTGATCCGAGCACCTTAGAGCAGCAGGTATGGACAACAGGCCTCAACCTCTCATACAGTGACCAGCTAGC
CATGACGCAGCTCACCCTCTACCTGACAAATGGTCATCTGAATTGTAGTCTGAGCACCCTGGAAGTGCCC
CGTTTTACTGAAGATTCAGAAAGGGAAAGGAAGCGCCTTAGCATCCAGGCAGAGCTGATGTGTAAGGCCC
ATGGCATTGGCTATGACCTTGAGGACAGACAAGGAACTGTTTTTATATTATATGAATCTCTGAAGAGATA
CAAGTTGGGCATGTTAACAATCGGTGTGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCAATCTCTTC
ATCATCCATCAAGAAATATCAGCACCTGATATGCAAGGCGAGACCAATTTTAAGACTACCATTGATGATA
TTGAAACCATTTTAGGAGTAACAGAAGAAAATAAAATGATATTTGTAAGAGAAAAACAGAGCAAAGAGGA
GGAAGATAACCTTTATGAACCTGTTGAAATACACTCAGAAATAGTCTGA

Translation (1042 aa):
MAQAQEDSDPIGSILIQVHEDLHQLKEKLVKFSAEETRSTLDIQNLETAIQRTEMGLKIHIDKYLGVVNQ
EVLMAPVKKSLESPVTSKWSIPTVIDQKSFIFPMDSDFWRPQKHRGSLLHGLRRAKPKIQLTTKVMQDPE
NKHHRAAVTASYGISLPHINQRKAQDKVQRLIKGSTISNLTVLPPSHRTDPHFIPIPVLQKDASKGVLSM
IERGLIPPTARITFQNPPIKPQALPLHSFDEHRKVPMEASFPLALKPRPVPEEVEEPSHQIEIPKGRAKR
SRGPLRRKGMKIRTPSKTRKSPWDYIFSVYNGCVDRTAPDFLAFKSRFKLIWGSIFSFLEQIEKFLKDYA
ISEAKIKGKSLVSLLPEFELKNKLTRNDVLAVLENPVHIQMLLNLPGQRYKGQDGKAEAATKIQATWKSY
KARSSFISYRQKKWASGVIALAWLLHCHRTRLKRIVKESRQRHLENFRIRAQHLAANWSRIRTSRRTIIH
IPSLGYSQYVRKHIFDLDVEQNMQLGRLCDIIDANVNVIYICSHPMTDELKLYYRKLLSLQAAVKTGYYG
DRTDLQNRFRIITPEAVNVFTKHHMCLATHLMYSPKAIKRIKNLIRGEEAYIVGGILHRDDLAVADMLNV
PILGSEPELVHLYSAKSGSKRIFDNANVPMPPGIYDIYTYQQMIEQLSQLVTDNLGIRRWVFKMNTEFGG
NGTAFCDIPSHLQCYNWVLKERNRFGHEDWKKKWAQESALVKISEELAGILAQHVQLVNEKRFPTWRKFL
HMFLTQGGVIEAYPPADSVTNLTVDMLIEPDGEVRVLSMGDQLHADGPFISSGTTMPQTSVDPQVLNSLC
LQIGNICKEKDVVGYFSIDLVTFIDPSTLEQQVWTTGLNLSYSDQLAMTQLTLYLTNGHLNCSLSTLEVP
RFTEDSERERKRLSIQAELMCKAHGIGYDLEDRQGTVFILYESLKRYKLGMLTIGVDLQGVLMTFARNLF
IIHQEISAPDMQGETNFKTTIDDIETILGVTEENKMIFVREKQSKEEEDNLYEPVEIHSEIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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