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Report for CCDS52945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52945.1 Public Mus musculus 9 Arpp21 23 108 98 CCDS HistoryNCBI Gene:74100Re-query CCDS DB by CCDS ID:52945.1Re-query CCDS DB by GeneID:74100See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070218.11 ENSMUSP00000069264.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070218.11Link to Ensembl Protein Viewer:ENSMUSP00000069264.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070218Re-query CCDS DB by Protein ID:ENSMUSP00000069264
Original member Current member EBI ENSMUST00000111872.8 ENSMUSP00000107503.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111872.8Link to Ensembl Protein Viewer:ENSMUSP00000107503.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111872Re-query CCDS DB by Protein ID:ENSMUSP00000107503
Original member Current member EBI ENSMUST00000162065.7 ENSMUSP00000125684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162065.7Link to Ensembl Protein Viewer:ENSMUSP00000125684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162065Re-query CCDS DB by Protein ID:ENSMUSP00000125684
Original member Current member NCBI NM_001177618.1 NP_001171089.1 Accepted alive Link to Nucleotide Sequence:NM_001177618.1Link to Protein Sequence:NP_001171089.1Re-query CCDS DB by Nucleotide ID:NM_001177618Re-query CCDS DB by Protein ID:NP_001171089Link to BLAST:NP_001171089.1
Original member Current member NCBI NM_001362010.1 NP_001348939.1 Accepted alive Link to Nucleotide Sequence:NM_001362010.1Link to Protein Sequence:NP_001348939.1Re-query CCDS DB by Nucleotide ID:NM_001362010Re-query CCDS DB by Protein ID:NP_001348939Link to BLAST:NP_001348939.1
Original member Current member NCBI NM_001362011.1 NP_001348940.1 Accepted alive Link to Nucleotide Sequence:NM_001362011.1Link to Protein Sequence:NP_001348940.1Re-query CCDS DB by Nucleotide ID:NM_001362011Re-query CCDS DB by Protein ID:NP_001348940Link to BLAST:NP_001348940.1
Original member Current member NCBI NM_001362012.1 NP_001348941.1 Accepted alive Link to Nucleotide Sequence:NM_001362012.1Link to Protein Sequence:NP_001348941.1Re-query CCDS DB by Nucleotide ID:NM_001362012Re-query CCDS DB by Protein ID:NP_001348941Link to BLAST:NP_001348941.1
Original member Current member NCBI NM_001362013.1 NP_001348942.1 Accepted alive Link to Nucleotide Sequence:NM_001362013.1Link to Protein Sequence:NP_001348942.1Re-query CCDS DB by Nucleotide ID:NM_001362013Re-query CCDS DB by Protein ID:NP_001348942Link to BLAST:NP_001348942.1
Original member Current member NCBI NM_001362014.1 NP_001348943.1 Accepted alive Link to Nucleotide Sequence:NM_001362014.1Link to Protein Sequence:NP_001348943.1Re-query CCDS DB by Nucleotide ID:NM_001362014Re-query CCDS DB by Protein ID:NP_001348943Link to BLAST:NP_001348943.1
Original member Current member NCBI NM_001362015.1 NP_001348944.1 Accepted alive Link to Nucleotide Sequence:NM_001362015.1Link to Protein Sequence:NP_001348944.1Re-query CCDS DB by Nucleotide ID:NM_001362015Re-query CCDS DB by Protein ID:NP_001348944Link to BLAST:NP_001348944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171089.1 809 Q9DCB4-3 809 100% 0 0
NP_001348939.1 809 Q9DCB4-3 809 100% 0 0
NP_001348940.1 809 Q9DCB4-3 809 100% 0 0
NP_001348941.1 809 Q9DCB4-3 809 100% 0 0
NP_001348942.1 809 Q9DCB4-3 809 100% 0 0
NP_001348943.1 809 Q9DCB4-3 809 100% 0 0
NP_001348944.1 809 Q9DCB4-3 809 100% 0 0

Chromosomal Locations for CCDS 52945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112065765 112066022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112067161 112067309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112119183 112119309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112124740 112125000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112126435 112126539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112127279 112127460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112136454 112136681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112143309 112143538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112147423 112147482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112149335 112149372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112157690 112157798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176095 112176235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176934 112176993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112177658 112177736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112179028 112179172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112183495 112183584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112184269 112184310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112185609 112185734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2430 nt):
ATGTCTGAGCAAGGAGGACTGACTCCGACCATACTGGAAGAAGGGCAGACGGAGCCAGAGTCTGCCCCAG
AAAATGGCATCCTCAAGTCAGAAAGTCTGGATGAGGAGGAGAAGCTGGAACTGCAGCGGCGACTGGCGGC
TCAGAACCAAGAGAGGAGAAAATCCAAGTCAGGAGCAGGCAAAGGGAAGCTGACCAGAAGTCTTGCTGTC
TGTGAAGAGTCTTCAGCTAGATCTGGAGGGGAAAGTCACCAGGATCAGGAATCAATTCACTTACAGCTTT
CCAGTTTCCCCAGCCTGCAAGAGGAGGATAAATCTAGGAAGGATGATTCTGAGAGAGAAAAAGAAAAGGA
TAAGAACAGAGAGAAACTCTCTGAGAGACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATAC
ACAGATTCTACAGGCATAGACTTACATGGGTTTCTAATTAACACGCTGAAGAACAATTCCAGGGACAGGA
TGATACTCTTGAAAATGGAGCAGGAAATGATTGATTTCATTGCTGACAGCAATAACCACTATAAAAAGTT
CCCCCAGATGTCATCCTATCAAAGGATGCTGGTCCATCGGGTGGCAGCGTACTTTGGATTGGACCACAAC
GTGGATCAAACTGGAAAATCTGTCATCATCAACAAGACCAGCAGCACCAGGATACCAGAGCAAAGGTTTT
GTGAACATTTAAAAGATGAAAAAAGTGAAGAATCCCAGAAGCGGTTTATCTTGAAGCGAGATAACTCTAG
TATTGATAAAGAAGACAATCAGTCAGTTTGCTCACAGGAAAGCCTATTTTTGGACAACAGTAGGCTCCAG
GAAGACATGCACATATGCAATGAGACCTATAAGAAAAGACAGCTCTTTCGGGCTCACCGAGACAGCTCAG
GAAGAACTTCCGGGAGCCGGCAGAGCAGCTCAGAGACTGAGCTCAGGTGGCCAGACCACCAGCGGGCTTG
GAGCAGCACAGATTCGGACAGTTCCAACCGCAATCTGAAGCCCACCATGACCAAGACGGCAAGTTTTGGG
GGCATCACGGTGCTGACCAGGGGCGACAGCACGTCCAGTACCAGGAGTGCTGGGAAACTGTCCAAAACAG
GTTCTGAGTCTTCCAGCAGTGCGGGCTCCTCAGGATCACTGTCCCGCACCCACCCACAGAGCACGGCCCT
GACCTCTAGCGTGGCAGCTGGTTCTCCTGGCTGTATGGCCTATTCAGAGAATGGAATGGGAGGCCAGGTT
CCTCCCAGCAGCACCAGCTACATCCTCCTCCCACTTGAAAGTGCGACTGGCATCCCACCCGGAAGCATCC
TTCTTAATCCACACACAGGTCAGCCCTTTGTGAACCCGGATGGAACGCCTGCGATATACAACCCTCCCGG
AAGTCAGCAGACACTGCGTGGCACTGTTGGTGGGCAGCCCCAGCAACCTCCACAGCAGCAACCTTCGCCT
CAGCCTCAGCAGCAGGTCCAGGCATCACAGCCCCAGATGGCAGGGCCACTGGTCACTCAGTCTGTCCAGA
GCCTGCAGCCATCTTCCCAGTCTGTGCAATATCCAGCGGTCTCTTTTCCTCCCCAGCATCTCCTGCCTAT
GTCGCCAACGCAGCACTTCCCCTTGAGAGAAGAACTGGCTGCCCAGTTCAGCCAGCTGAGCATGAGCCGG
CAGTCCTCGGGAGACACTCCTGAACCTCCCTCTGGTACAGTCTACCCAGCCTCTCTCCTGCCACAAACGG
CTCAGCCACAGAGTTATGTCATCACTTCTGCAGGCCAGCAGCTCTCTACAGGGGGCTTCTCGGACTCTGG
CCCGCCCATCTCCCAGCAGGTCCTGCAGGCCCCGCCCTCTCCCCAGGGATTTGTACAGCAGCCTCCACCT
GCACAGATGTCCGTCTATTACTACCCATCTGGTCAGTACCCTACCTCAACCTCACAGCAGTACCGACCCC
TCGCCTCAGTCCAGTACAGTGCTCAGCGGAGTCAGCAAATACCACAGACCACACAGCAAGCAGGTTACCA
GCCAGTCTTGTCTGGTCAGCAGGGCTTCCAAGGCATGATGGGAGTACAGCAGTCAGCGCACAGCCAGGGT
GTGATGAGCAGTCAGCAAGGAGCCCCGGTGCATGGTGTGATGGTCTCCTACCCAACCATGTCTTCTTATC
AGGTGCCAATGACCCAAGGCTCTCAAGCAGTGCCCCAGCAGACATACCAACCACCAATCATGCTGCCCAG
TCAGGCAGGCCAAGGGTCACTCCCAGCCACCGGAATGCCTGTGTACTGTAACGTCACACCGCCAAACCCT
CAGAACAACCTAAGGTTGATGGGTCCACACTGCCCCTCCAGCACGGTTCCTGTCATGTCCGCTAGTTGCA
GAACAAACTGTGGGAACGTGAGCAACGCAGGCTGGCAGGTCAAGTTCTGA

Translation (809 aa):
MSEQGGLTPTILEEGQTEPESAPENGILKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAV
CEESSARSGGESHQDQESIHLQLSSFPSLQEEDKSRKDDSEREKEKDKNREKLSERPKIRMLSKDCSQEY
TDSTGIDLHGFLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHN
VDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQSVCSQESLFLDNSRLQ
EDMHICNETYKKRQLFRAHRDSSGRTSGSRQSSSETELRWPDHQRAWSSTDSDSSNRNLKPTMTKTASFG
GITVLTRGDSTSSTRSAGKLSKTGSESSSSAGSSGSLSRTHPQSTALTSSVAAGSPGCMAYSENGMGGQV
PPSSTSYILLPLESATGIPPGSILLNPHTGQPFVNPDGTPAIYNPPGSQQTLRGTVGGQPQQPPQQQPSP
QPQQQVQASQPQMAGPLVTQSVQSLQPSSQSVQYPAVSFPPQHLLPMSPTQHFPLREELAAQFSQLSMSR
QSSGDTPEPPSGTVYPASLLPQTAQPQSYVITSAGQQLSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPP
AQMSVYYYPSGQYPTSTSQQYRPLASVQYSAQRSQQIPQTTQQAGYQPVLSGQQGFQGMMGVQQSAHSQG
VMSSQQGAPVHGVMVSYPTMSSYQVPMTQGSQAVPQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNP
QNNLRLMGPHCPSSTVPVMSASCRTNCGNVSNAGWQVKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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