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Report for CCDS53154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53154.1 Public Mus musculus X Zmym3 23 108 98 CCDS HistoryNCBI Gene:56364Re-query CCDS DB by CCDS ID:53154.1Re-query CCDS DB by GeneID:56364See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120201.7 ENSMUSP00000114005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120201.7Link to Ensembl Protein Viewer:ENSMUSP00000114005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120201Re-query CCDS DB by Protein ID:ENSMUSP00000114005
Original member Current member EBI ENSMUST00000121429.7 ENSMUSP00000114118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121429.7Link to Ensembl Protein Viewer:ENSMUSP00000114118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121429Re-query CCDS DB by Protein ID:ENSMUSP00000114118
Original member Current member NCBI NM_001177986.1 NP_001171457.1 Accepted alive Link to Nucleotide Sequence:NM_001177986.1Link to Protein Sequence:NP_001171457.1Re-query CCDS DB by Nucleotide ID:NM_001177986Re-query CCDS DB by Protein ID:NP_001171457Link to BLAST:NP_001171457.1

Chromosomal Locations for CCDS 53154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101415170 101415406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101415761 101415938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101416167 101416461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101416909 101416981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101417287 101417330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101418273 101418939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACC
TTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCC
CCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCT
GGAGGAGTTCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCC
CAGAGGTGGACCATGGTCCTGAGGGAACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACC
AGGGTGTCAAACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCTAGTCCCCCTTCACCTGAGGGG
CTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGATACCCC
CCTTAGCTACAAGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCATACCCAAGGGCAGCCACAGAGCCC
CAATGCACCCCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGCATCAACAGTTCTCAGAGCAAACCT
GGGGTATGTACCCCTACTGCACATCCTTCGTTGCCAGGAGATGGCCTGACTGGGAAGGAGATTGAGAAGC
CGCCTGAGAGGGTACAGAAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAGCCTGAGGTTGTGGA
CTCCACTGAGAGCATTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGAC
TTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTGCGCTCAAGTATGGCACAAAGGGCTGGGC
GCTCTTCAATGGGCACCAAGATGTCTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACGGCCTA
TCAGCGCAAGGGGTTGCCTCAGCTCTTCTGTTCTTCATCTTGTCTCACTACTTACTCCAAGAAGCCCTTG
GGCAGAAAGACCTGTACCTTCTGCAAGAAGGAGATCTGGAACACCAAGGACTCAGTTGTGGTACAGACTG
GTCCAGGAGGCTCCTTCCATGAGTTCTGCACATCTGTCTGTCTCTCTCTCTATGAGGCCCAGCAGCAGCG
TCCAATCCCCCAGTCTGGGGATCCTGCCGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAGGTT
CTTCATGAGGTCAGCAATGGCAGCGTGGTACACCGACTCTGCAGCGATTCTTGCTTCTCCAAATTCCGAG
CCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTATGCCAGGCCTGGGGGCCT
TGGCCCAGAGCTCCTGTTTCATGATGGTCAACAAAAGCGGTTTTGCAACACAACGTGCTTGGGGGCATAC
AAGAAGGTGGGGCCGAGGGAGTAG

Translation (497 aa):
MDPSDFPSPFDPLTLPEKPLAGDLPVDMEFGEDLLESQTAPSRGWAPPGPSPSSGALDLLDTPSGLEKDP
GGVLDGATELLGLGGLLYKAPSPPEVDHGPEGTLAWDSGEQTLEPGPGCQTPEVMPPDPGAGASPPSPEG
LLEPLAPDSPIILESPHIEEEIPPLATRRRGSPGQEEEHTQGQPQSPNAPPSPSVGETLGDGINSSQSKP
GVCTPTAHPSLPGDGLTGKEIEKPPERVQKRSERVRRAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDED
FVPFRPRRSPRMSLRSSMAQRAGRSSMGTKMSCAHCRTPLQKGQTAYQRKGLPQLFCSSSCLTTYSKKPL
GRKTCTFCKKEIWNTKDSVVVQTGPGGSFHEFCTSVCLSLYEAQQQRPIPQSGDPADATRCSICQKTGEV
LHEVSNGSVVHRLCSDSCFSKFRANKGLKTNCCDQCGAYIYARPGGLGPELLFHDGQQKRFCNTTCLGAY
KKVGPRE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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