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Report for CCDS53170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53170.1 Public Mus musculus X Taf9b 23 108 98 CCDS HistoryNCBI Gene:407786Re-query CCDS DB by CCDS ID:53170.1Re-query CCDS DB by GeneID:407786See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113495.8 ENSMUSP00000109123.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113495.8Link to Ensembl Protein Viewer:ENSMUSP00000109123.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113495Re-query CCDS DB by Protein ID:ENSMUSP00000109123
Original member Current member NCBI NM_001167988.1 NP_001161460.1 Accepted alive Link to Nucleotide Sequence:NM_001167988.1Link to Protein Sequence:NP_001161460.1Re-query CCDS DB by Nucleotide ID:NM_001167988Re-query CCDS DB by Protein ID:NP_001161460Link to BLAST:NP_001161460.1

Chromosomal Locations for CCDS 53170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106208494 106208657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106209707 106209817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106216127 106216196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218097 106218231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218310 106218446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218896 106218977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106219579 106219698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106221077 106221139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCTGACCAGGAGTCGGATGCGTTTGACCAGATTGTCGAGGAGGAGTCGTCCTCGGATGAGGGGTGGA
GCCAGACCGAGGTGGAAACCGCCTGCAGCTCTATCTCCGAGGTTGAGGAGCCGCAAGAGAAAATGGAGCC
GGCCAAGATGGCGCCTATCAAGAACGCTCCGAGAGATGCCTTGGTGATGGCACAGATCCTGAAGGATATG
GGAATCACAGAGTATGAGCCAAGGGTTATAAATCAAATGTTGGAATTTGCTTTCCGATATGTGACTACAA
TTCTGGACGATGCAAAGATTTATTCGAGTCATGCTAAGAAACCCACTGTTGATGCCGATGACGTGAGACT
GGCCATCCAGTGTCGGGCTGACCAGTCCTTTACCTCTCCTCCCCCAAGAGATTTTTTACTAGATATTGCA
AGGCAGAAGAATCAAACCCCTTTGCCGCTGATTAAGCCATATGCAGGACCCAGACTGCCACCTGATAGAT
ACTGCTTAACAGCTCCAAACTATAGGCTGAAGTCCTTAGTTAAAAAGGGACCTAACCAAGGAAGACTAGT
GCCTAGATTAAGTGCGGTCAGTAGTAGACCAACTACTCCTCCTGTAGCACCCCCACAAGCAGTATCTGGC
CCAAATAAGGCTGCAACTCCGGTGTCAGTGACAAGCCAAAGATTTGCTGTGCAGATTCCACCTTCTCAGT
CCACACCTGCCAAGCCAGCTCCTGCAGCAACTGCAGTCCAAAATGTTCTGATTAATCCTTCAATGATTGG
GCCCAAAAATATTCTCATTACCACCAGCATGGTTTCCTCACAGAACACAGCCACCGACTCAAACCCACTG
AAGAGGAAGCATGATGACGACGATGACAATGACACCATGTAA

Translation (293 aa):
MADQESDAFDQIVEEESSSDEGWSQTEVETACSSISEVEEPQEKMEPAKMAPIKNAPRDALVMAQILKDM
GITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIA
RQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLVKKGPNQGRLVPRLSAVSSRPTTPPVAPPQAVSG
PNKAATPVSVTSQRFAVQIPPSQSTPAKPAPAATAVQNVLINPSMIGPKNILITTSMVSSQNTATDSNPL
KRKHDDDDDNDTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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