NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53190.1 Reviewed, update pending Mus musculus X Pramex1 23 108 98 CCDS HistoryNCBI Gene:75829Re-query CCDS DB by CCDS ID:53190.1Re-query CCDS DB by GeneID:75829See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 53190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033786.5 ENSMUSP00000033786.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033786.5Link to Ensembl Protein Viewer:ENSMUSP00000033786.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033786Re-query CCDS DB by Protein ID:ENSMUSP00000033786
Original member Current member EBI ENSMUST00000113159.7 ENSMUSP00000108784.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113159.7Link to Ensembl Protein Viewer:ENSMUSP00000108784.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113159Re-query CCDS DB by Protein ID:ENSMUSP00000108784
Original member NCBI NM_029459.2 NP_083735.2 Updated not alive Link to Nucleotide Sequence:NM_029459.2Link to Protein Sequence:NP_083735.2Re-query CCDS DB by Nucleotide ID:NM_029459Re-query CCDS DB by Protein ID:NP_083735
Current member NCBI NM_029459.3 NP_083735.3 Pending alive Link to Nucleotide Sequence:NM_029459.3Link to Protein Sequence:NP_083735.3Re-query CCDS DB by Nucleotide ID:NM_029459Re-query CCDS DB by Protein ID:NP_083735Link to BLAST:NP_083735.3

Chromosomal Locations for CCDS 53190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135613144 135613657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135614446 135615030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135615510 135615805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGATGATGGATGAAAGAGACCCATCCTCGCTTTTGGATCTGGCTATACAGAGTCTACTAAGTAATGAGC
TTGTAGCAATTCATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTTCCATTGTTCTCTGCTGCCTTCAC
GGGAGGATATAGGAAGATACTGACTTCAATGGTGAAGATTTGGCCTTTTACCTGTCTCCACATTGGAACA
TTAAGTGTACAGGAACCCCAGCGTGAACTCCTGAAAGCCATGGTTGAGAGTCTTCAGTTTCTTCCTGCCC
AGGACTGTTCTTCTGGGGGCCCTAAGTTGAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAAC
ATGCCCTGATTTTGGTGCCAGATCTCCAACTTGTTTTCATGGTTGTACTCACTCTGTACACTCTATTCTG
AAGTTAGAAAGCCAGTACAGCATTGTAGATCTAAAGCCCGAGAGTCAGTCTGCAATCCAGCCTATGGAAC
TACTAGTAGACCTTTCCCTTGATGGTACCTTGAGAGAAAGGGAATTTTTTGCTTTGCTTCTGAATAAAGT
ACAGCAGAGCTCAGGGTCTTTGCACCTCTGCTGCCGAGATCTACAAATTGATAGATTTTCTTATGCCAAA
AACGCTCTGAAGTTCCTCGATCTAACTTGCATTCAGAACCTGACAGTTGATCAGGCTTCACTGAGTGAAG
TCACCACTCTTCTGGCTCGCATGATCTATCTGGACAGCCTGAGTCTCTCTAAAATCACTTATAGATCTTT
GCATGGGAAAGTCTTCCGAGTGTTCCTCAACTATCTTGGGCGGATGAACTGCCTGAAAGAGCTCAACCTG
TCTTCCTTTAGCCTCACAGACCATCTGGATAGCCTCCTCAGAGCCTTACCACCTAATTTGGATTTCTTGT
ATCTGCCGTTCTGTGAAATTTCTTACAGAGATCTCAAATTTCTATCCCAGAGTGCTCAGGCCACCCACTT
AAAGCTGTTGAATCTTAGTAACAACCCAATGTATTGGGATGATTGTGGGCCTTTTCAGACTCTTTTGCAG
AAGCTCTCAGATACCTTGCAGCATCTGGCCATAAACCATTGCCATTTAACAGATGCCATACTCTCTGCTA
TTCTGCCAGCACTATCTAAGTGTTCCCATCTCCGTGTGATTAGCTTTGTCTCTAACCCCATTTCAATGCC
TATGCTCCTGAAAATTCTTCATTACTTAACACCTTTGATGGAGCTGAAATACGTGATTTACCCTATCCCT
ATACATTGCTATGAACAATGGCAATTTCATGGCAGATTAGACCGGCAGAAGCTCACCGATGTCCAAGCAC
AACTGAAGGCAATGCTACAAGCAGCAAAAAGGAGTGACATGAACTGGATCACTTATTCTCAGTAA

Translation (464 aa):
MMMDERDPSSLLDLAIQSLLSNELVAIHSLGEIPRELFVPLFSAAFTGGYRKILTSMVKIWPFTCLHIGT
LSVQEPQRELLKAMVESLQFLPAQDCSSGGPKLRILDVRQGVDCKTTCPDFGARSPTCFHGCTHSVHSIL
KLESQYSIVDLKPESQSAIQPMELLVDLSLDGTLREREFFALLLNKVQQSSGSLHLCCRDLQIDRFSYAK
NALKFLDLTCIQNLTVDQASLSEVTTLLARMIYLDSLSLSKITYRSLHGKVFRVFLNYLGRMNCLKELNL
SSFSLTDHLDSLLRALPPNLDFLYLPFCEISYRDLKFLSQSAQATHLKLLNLSNNPMYWDDCGPFQTLLQ
KLSDTLQHLAINHCHLTDAILSAILPALSKCSHLRVISFVSNPISMPMLLKILHYLTPLMELKYVIYPIP
IHCYEQWQFHGRLDRQKLTDVQAQLKAMLQAAKRSDMNWITYSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH