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Report for CCDS53205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53205.1 Public Mus musculus X Rbm41 23 108 98 CCDS HistoryNCBI Gene:237073Re-query CCDS DB by CCDS ID:53205.1Re-query CCDS DB by GeneID:237073See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53205.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087400.11 ENSMUSP00000084662.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087400.11Link to Ensembl Protein Viewer:ENSMUSP00000084662.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087400Re-query CCDS DB by Protein ID:ENSMUSP00000084662
Original member Current member NCBI NM_001172148.1 NP_001165619.1 Accepted alive Link to Nucleotide Sequence:NM_001172148.1Link to Protein Sequence:NP_001165619.1Re-query CCDS DB by Nucleotide ID:NM_001172148Re-query CCDS DB by Protein ID:NP_001165619Link to BLAST:NP_001165619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165619.1 404 Q8JZV4-3 404 100% 0 0

Chromosomal Locations for CCDS 53205.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139890437 139890576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139954907 139955054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139968196 139968599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139993298 139993502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139993912 139994104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139995112 139995228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139998500 139998507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGAAGAGGGTAAATAGCTGTGTGAAGGATGAAGAACATGTCCTGGAGGAACTGGAAACAGAAGGTGAGA
GGCAGCTCAAGAGCCTCCTTCAACATCAACTCGATACCTCTGTCTCCATTGAAGAATGTGTCTCTAAGAA
AAAGAGCTTTGCGCCTGGGACTATGTACAAGCCCTTTGGGAAGGAAGCAGCTGGGACAATGACTTTGTCC
CAGTTCCAGACACTACATGAAAAAGACCAGGAAACTGCTTCTCTCAGGGAATTAGGGCTCAATGAAACTG
AAATATTGATCTGGAAAAGCCATGTTTCCGGTGAAAAGAGGACAAAGCTGAGGGCAACTCCCGAAGCAAT
ACAGAAACGGCTTGAAGATATTAAAGAAAGAATCTCAGAGCGCCAGCGCATCCTTTGCCTGCCACAGAGG
TTTTCAAAGAGCAAACAGCTGACCCGAAGAGAAATGGAAATTGAGAAGTCTTTATTTCAGGGAACTGATC
GTCACTCCTTCCTTAAGGCTCTTTATTACCAAGATGAACCCCCAAAGAAGAACAAAGGTGACCCCATGAA
CAACCTGGAACATTTTTACCGCGAGACTATAATGAAAAAGCGTCTTGAAGAGTTCCAACTTTTGAGAGGT
GAATCCTTTGCTTGCCACTCACTGGTCTCAGCTGCATCCGTGAGTGGTAGTGGCACAGCTGAGAAGCCAT
CACTCCTCCAGGACAAGGGAAAACAGGCAGCACAGGGTAAAGGCCCCAGGCTCCATGTGGCAAAGCTTAT
TGATTTTCCAACTGAGCAATATTGGACTGGGCCTAAGACGCTGAAGCAACCAATAGAATTTATCCCAGAA
GATGAGATCCAGAGAAATCGTTTGTCAGAGGAGGAGATCCGAAACATTCCTATGTTTTCTTCATATAATC
CAGGGGAACCAAACAAGGTGCTATATCTGAAGAACCTTAGTCCTCGGGTGAAAGAAAGAGACCTTATCTC
ATTATTCGCTCGATTCCAGGAGAAGAAAGGACCACCCATTCAGTTCCGAATGATGACTGGACGCATGAGG
GGGCAAGCTTTCCTCACCTTTCCCAGGGAAAGAATTTCCAGAAGGCCCTGCTATTTTCACTGGGAGTACT
TGACAATTTTCAACTCAGTGGCACTACCACGAATGGTACTGAAGACAGCATCATCTGAACTTTTCAAGCA
GCATGAGCTGAGCTTGGGCTTCTAG

Translation (404 aa):
MKRVNSCVKDEEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKKSFAPGTMYKPFGKEAAGTMTLS
QFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQKRLEDIKERISERQRILCLPQR
FSKSKQLTRREMEIEKSLFQGTDRHSFLKALYYQDEPPKKNKGDPMNNLEHFYRETIMKKRLEEFQLLRG
ESFACHSLVSAASVSGSGTAEKPSLLQDKGKQAAQGKGPRLHVAKLIDFPTEQYWTGPKTLKQPIEFIPE
DEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMR
GQAFLTFPRERISRRPCYFHWEYLTIFNSVALPRMVLKTASSELFKQHELSLGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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