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Report for CCDS53208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53208.1 Public Mus musculus X Chrdl1 23 108 98 CCDS HistoryNCBI Gene:83453Re-query CCDS DB by CCDS ID:53208.1Re-query CCDS DB by GeneID:83453See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063029.12 ENSMUSP00000056193.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063029.12Link to Ensembl Protein Viewer:ENSMUSP00000056193.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063029Re-query CCDS DB by Protein ID:ENSMUSP00000056193
Original member Current member EBI ENSMUST00000112878.8 ENSMUSP00000108499.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112878.8Link to Ensembl Protein Viewer:ENSMUSP00000108499.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112878Re-query CCDS DB by Protein ID:ENSMUSP00000108499
Original member Current member NCBI NM_001114385.1 NP_001107857.1 Accepted alive Link to Nucleotide Sequence:NM_001114385.1Link to Protein Sequence:NP_001107857.1Re-query CCDS DB by Nucleotide ID:NM_001114385Re-query CCDS DB by Protein ID:NP_001107857Link to BLAST:NP_001107857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107857.1 447 Q920C1-1 447 100% 0 0

Chromosomal Locations for CCDS 53208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 143287866 143287996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143291095 143291184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143294174 143294341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143299869 143300063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143303349 143303517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143311082 143311149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143325989 143326082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143327922 143328064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143365897 143365990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143368352 143368464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143390007 143390085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGATGGCATGAAATACATCATTTCCTTATTTTTCATCTTTGTTTTCCTAGAAGGAAGCAAAACAGAAC
AAGTAAAACACTCAGACACATATTGCGTGTTTCAAGACAAGAAGTATAGAGTGGGTGAGAAATGGCATCC
CTACCTGGAACCGTATGGACTGGTTTACTGTGTGAACTGCATCTGCTCTGAGAATGGGAATGTGCTTTGC
AGCCGAGTCAGATGTCCAAGTCTTCATTGCCTTTCACCCGTGCATATTCCTCATCTCTGTTGCCCCCGCT
GCCCAGACTCCTTACCACCAGTGAACAATAAGGTGACCAGCAAGTCATGCGAATACAATGGAACCACTTA
CCAACATGGAGAACTGTTCATAGCTGAAGGGCTCTTTCAGAACCGGCAACCCAATCAGTGCAGTCAGTGT
AGCTGCTCGGAGGGGAATGTATACTGTGGTCTCAAGACTTGCCCCAAACTGACCTGTGCATTCCCAGTCT
CTGTTCCAGATTCTTGCTGCCGAGTATGCAGAGGGGATGCAGAATTATCGTGGGAACATGCGGATGGTGA
TATCTTCCGGCAACCTGCCAACAGAGAAGCAAGACATTCTTACCTCCGTTCCCCCTACGATCCTCCACCA
AACAGACAAGCTGGAGGTCTTCCCCGCTTTCCTGGGAGCAGAAGTCACCGGGGAGCTGTTATAGATTCCC
AGCAAGCATCCGGGACCATCGTGCAGATTGTCATCAATAACAAGCACAAACATGGACAAGTGTGTGTTTC
CAATGGAAAGACCTACTCTCATGGAGAGTCCTGGCACCCAAATCTACGAGCATTTGGCATTGTGGAATGT
GTACTATGCACTTGTAATGTCACCAAGCAAGAATGTAAGAAAATCCACTGCCCCAATCGATACCCCTGCA
AGTATCCTCAAAAAATAGATGGAAAGTGCTGCAAGGTGTGCCCAGAAGAACCTCCAAGCCAAAACTTTGA
CAGCAAAGGTTCCTTTTGTGGAGAAGAAACCATGCCTGTATATGAGTCTGTGTTCATGGAGGATGGAGAG
ACAACCAGAAAAGTAGCACTGGAGACCGAGAGACCACCTCAAGTAGAGGTCCACGTTTGGACTATTCAAA
AGGGCATTCTCCAGCACTTCCACATTGAGAAGATTTCCAAGAGGATGTTTGGGGAGCTCCATCATTTCAA
GCTAGTTACTCGGACCACCTTGAACCAGTGGAAGCTCTTCACTGAAGGAGAAGCTCAGCTCAGCCAGATG
TGCTCAAGTCAGGTGTGCAGAACAGAGCTGGAAGATTTAGTCCAGGTTTTGTACCTGGGGAGACCTGAAA
AGGACCACTGTTAG

Translation (447 aa):
MDGMKYIISLFFIFVFLEGSKTEQVKHSDTYCVFQDKKYRVGEKWHPYLEPYGLVYCVNCICSENGNVLC
SRVRCPSLHCLSPVHIPHLCCPRCPDSLPPVNNKVTSKSCEYNGTTYQHGELFIAEGLFQNRQPNQCSQC
SCSEGNVYCGLKTCPKLTCAFPVSVPDSCCRVCRGDAELSWEHADGDIFRQPANREARHSYLRSPYDPPP
NRQAGGLPRFPGSRSHRGAVIDSQQASGTIVQIVINNKHKHGQVCVSNGKTYSHGESWHPNLRAFGIVEC
VLCTCNVTKQECKKIHCPNRYPCKYPQKIDGKCCKVCPEEPPSQNFDSKGSFCGEETMPVYESVFMEDGE
TTRKVALETERPPQVEVHVWTIQKGILQHFHIEKISKRMFGELHHFKLVTRTTLNQWKLFTEGEAQLSQM
CSSQVCRTELEDLVQVLYLGRPEKDHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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