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Report for CCDS53449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53449.1 Public Homo sapiens 1 ODR4 24 110 108 CCDS HistoryNCBI Gene:54953Re-query CCDS DB by CCDS ID:53449.1Re-query CCDS DB by GeneID:54953See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367470.8 ENSP00000356440.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367470.8Link to Ensembl Protein Viewer:ENSP00000356440.3Re-query CCDS DB by Nucleotide ID:ENST00000367470Re-query CCDS DB by Protein ID:ENSP00000356440
Original member Current member NCBI NM_001164245.2 NP_001157717.1 Accepted alive Link to Nucleotide Sequence:NM_001164245.2Link to Protein Sequence:NP_001157717.1Re-query CCDS DB by Nucleotide ID:NM_001164245Re-query CCDS DB by Protein ID:NP_001157717Link to BLAST:NP_001157717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157717.1 431 Q5SWX8-2 431 100% 0 0

Chromosomal Locations for CCDS 53449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 186379786 186379884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186383022 186383156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186385988 186386083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186388442 186388548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186389588 186389624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186390711 186390851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186391696 186391791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186398313 186398441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186398954 186399044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186406083 186406268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186417544 186417654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186419009 186419076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGAAGAACCTACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAAACATAAATCTCCAAGGAAAGG
CTTTTGTCTCTGGCCTTTTAATAGGACAGTGTTCGTCACAAAAGGATTATGTGATTCTTGCCACTAGAAC
GCCACCCAAAGAGGAGCAAAGTGAGAACCTCAAACATCCCAAAGCTAAGTTGGATAACTTGGATGAAGAA
TGGGCCACAGAACATGCCTGCCAGGTATCCAGAATGCTACCAGGGGGACTTTTAGTTCTTGGAGTATTTA
TTATTACTACTTTAGAACTGGCAAATGATTTTCAAAATGCCCTGCGTAGACTAATGTTTGCTGTGGAAAA
GTCTATAAATAGAAAGAGATTGTGGAATTTCACAGAGGAGGAAGTCTCAGAACGAGTGACACTTCACATT
TGTGCTTCTACAAAAAAAATATTTTGTCGAACTTATGATATCCATGATCCAAAGAGTTCAGCAAGACCAG
CAGATTGGAAGTATCAAAGTGGATTATCATCCTCATGGCTTTCTTTAGAGTGTACAGTTCACATTAATAT
TCACATCCCACTTTCTGCTACTTCTGTCAGCTATACTCTGGAGAAAAATACAAAGAATGGACTTACACGC
TGGGCCAAGGAAATAGAAAATGGTGTTTATTTGATTAATGGACAAGTTAAAGATGAAGATTGTGACCTAT
TAGAAGGACAGCTCCTGAATTCAGACCACAGATCCACAGCCACAGTCCAGATATGTAGCGGTTCTGTAAA
CCTTAAGGGTGCTGTGAAATGCAGAGCTTATATCCACAGCAGTAAACCCAAAGTTAAAGATGCTGTGCAG
GCAGTAAAGAGGGATATATTGAACACAGTTGCTGATCGTTGTGAAATGCTATTTGAGGATCTGCTTTTGA
ATGAAATTCCAGAAAAAAAAGATTCTGAAAAAGAGTTCCACGTCCTCCCTTATCGAGTCTTTGTTCCCCT
TCCTGGATCCACTGTAATGTTGTGTGATTATAAATTTGACGATGAGTCAGCTGAAGAAATCAGGGACCAT
TTTATGGAGATGTTGGATCACACAATTCAAATAGAAGATTTGGAAATTGCAGAGGAAACAAACACAGCTT
GTATGAGTTCTTCTATGAATAGTCAAGCTTCATTGGACAACACAGATGATGAACAACCAAAACAACCAAT
TAAAACTACAATGTTATTGAAAATTCAGCAAAACATAGGTGTGATTGCAGCATTTACAGTTGCAGTCCTT
GCTGCGGGTATCTCCTTTCATTACTTCAGTGATTAG

Translation (431 aa):
MGRTYIVEETVGQYLSNINLQGKAFVSGLLIGQCSSQKDYVILATRTPPKEEQSENLKHPKAKLDNLDEE
WATEHACQVSRMLPGGLLVLGVFIITTLELANDFQNALRRLMFAVEKSINRKRLWNFTEEEVSERVTLHI
CASTKKIFCRTYDIHDPKSSARPADWKYQSGLSSSWLSLECTVHINIHIPLSATSVSYTLEKNTKNGLTR
WAKEIENGVYLINGQVKDEDCDLLEGQLLNSDHRSTATVQICSGSVNLKGAVKCRAYIHSSKPKVKDAVQ
AVKRDILNTVADRCEMLFEDLLLNEIPEKKDSEKEFHVLPYRVFVPLPGSTVMLCDYKFDDESAEEIRDH
FMEMLDHTIQIEDLEIAEETNTACMSSSMNSQASLDNTDDEQPKQPIKTTMLLKIQQNIGVIAAFTVAVL
AAGISFHYFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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