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Report for CCDS54008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54008.1 Public Homo sapiens 16 TOX3 24 110 108 CCDS HistoryNCBI Gene:27324Re-query CCDS DB by CCDS ID:54008.1Re-query CCDS DB by GeneID:27324See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407228.7 ENSP00000385705.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407228.7Link to Ensembl Protein Viewer:ENSP00000385705.3Re-query CCDS DB by Nucleotide ID:ENST00000407228Re-query CCDS DB by Protein ID:ENSP00000385705
Original member Current member NCBI NM_001146188.2 NP_001139660.1 Accepted alive Link to Nucleotide Sequence:NM_001146188.2Link to Protein Sequence:NP_001139660.1Re-query CCDS DB by Nucleotide ID:NM_001146188Re-query CCDS DB by Protein ID:NP_001139660Link to BLAST:NP_001139660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139660.1 571 O15405-2 571 100% 0 0

Chromosomal Locations for CCDS 54008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 52439225 52439968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52444276 52444356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52445994 52446221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52450277 52450546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52463934 52464185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52468509 52468574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52519406 52519480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGAAGTGCCAACCTCGCTCGGGAGCCAGGCGCATTGAGGAGAGACTTCATTACCTGATAACTACCTATC
TG
AAATTTGGAAATAATAATAACTATATGAATATGGCTGAGGCGAACAATGCGTTCTTCGCTGCCAGTGA
G
ACATTCCACACACCAAGCCTTGGGGACGAGGAATTCGAAATTCCACCAATCACGCCTCCTCCAGAGTCA
GAC
CCTGCCCTAGGCATGCCGGATGTACTGCTACCCTTTCAAGCCCTCAGCGATCCATTGCCTTCCCAGG
GA
AGTGAATTCACACCCCAGTTTCCCCCTCAAAGCCTGGACCTCCCTTCCATTACAATCTCAAGAAATCT
C
GTGGAACAAGATGGCGTGCTTCATAGCAGTGGGTTGCATATGGATCAGAGCCACACACAAGTGTCCCAG
TAC
CGGCAGGATCCCTCCCTGATCATGCGGTCCATCGTCCACATGACCGATGCTGCGCGTTCTGGGGTCA
TG
CCTCCTGCCCAGCTCACCACCATCAACCAGTCTCAGCTCAGCGCCCAGTTGGGGTTGAATTTGGGAGG
T
GCCAGTATGCCTCACACATCTCCTTCACCTCCAGCAAGCAAATCAGCCACTCCCTCCCCTTCCAGCTCC
ATC
AATGAAGAGGATGCTGATGAAGCCAACAGAGCCATTGGAGAGAAAAGAGCTGCTCCAGACTCTGGCA
AG
AAGCCCAAGACTCCAAAGAAAAAGAAAAAGAAAGATCCCAATGAGCCACAGAAGCCAGTGTCAGCATA
T
GCCCTGTTTTTCAGAGACACACAGGCTGCAATTAAAGGTCAAAACCCCAATGCAACCTTTGGAGAGGTC
TCA
AAAATTGTAGCATCTATGTGGGACAGCCTTGGAGAAGAACAAAAGCAGGTATATAAAAGGAAAACAG
AA
GCTGCCAAAAAAGAATACCTGAAGGCCCTGGCGGCATACAGGGCCAGCCTCGTTTCTAAGGCTGCTGC
T
GAGTCAGCAGAAGCCCAGACCATCCGTTCTGTTCAGCAGACCCTGGCGTCGACCAATCTAACATCCTCT
CTC
CTTCTCAACACTCCACTGTCTCAACATGGAACAGTGTCAGCATCACCTCAGACTCTCCAGCAATCCC
TC
CCTAGGTCAATCGCTCCCAAACCCTTAACCATGAGACTCCCCATGAACCAGATTGTCACATCAGTCAC
C
ATTGCAGCCAACATGCCCTCGAACATTGGGGCTCCACTGATAAGCTCCATGGGAACGACCATGGTTGGC
TCA
GCACCCTCCACCCAAGTGAGTCCTTCGGTGCAAACCCAGCAGCATCAGATGCAATTGCAGCAGCAGC
AG
CAGCAGCAACAACAACAGATGCAACAGATGCAGCAGCAGCAACTCCAGCAGCACCAAATGCATCAGCA
A
ATCCAGCAGCAGATGCAGCAGCAGCATTTCCAGCACCACATGCAGCAGCACCTGCAGCAGCAGCAGCAG
CAT
CTCCAGCAGCAAATTAATCAACAGCAGCTGCAGCAGCAGCTGCAGCAGCGCCTCCAGCTGCAGCAGC
TG
CAACACATGCAGCACCAGTCTCAGCCTTCTCCTCGGCAGCACTCCCCTGTCGCCTCTCAGATAACATC
C
CCCATCCCTGCCATCGGGAGCCCCCAGCCAGCCTCTCAGCAGCACCAGTCGCAAATACAGTCTCAGACA
CAG
ACTCAAGTATTATCGCAGGTCAGTATTTTCTGA


Translation (571 aa):
MKCQPRSGARRIEERLHYLITTYLKFGNNNNYMNMAEANNAFFAASETFHTPSLGDEEFEIPPITPPPES
D
PALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHM
DQSHTQVSQ
Y
RQDPSLIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSS
I
NEEDADEANR
AIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEV
S
KIVASMWDSLGEEQKQ
VYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSS
L
LLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMGTTMVG
S
APSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQ
H
LQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIPAIGSPQPASQQHQSQIQSQT
Q
TQVLSQVSIF




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser