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Report for CCDS54009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54009.1 Public Homo sapiens 16 TOX3 24 110 108 CCDS HistoryNCBI Gene:27324Re-query CCDS DB by CCDS ID:54009.1Re-query CCDS DB by GeneID:27324See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219746.14 ENSP00000219746.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219746.14Link to Ensembl Protein Viewer:ENSP00000219746.9Re-query CCDS DB by Nucleotide ID:ENST00000219746Re-query CCDS DB by Protein ID:ENSP00000219746
Original member Current member NCBI NM_001080430.4 NP_001073899.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080430.4Link to Protein Sequence:NP_001073899.2Re-query CCDS DB by Nucleotide ID:NM_001080430Re-query CCDS DB by Protein ID:NP_001073899Link to BLAST:NP_001073899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073899.2 576 O15405-1 576 100% 0 0

Chromosomal Locations for CCDS 54009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 52439225 52439968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52444276 52444356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52445994 52446221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52450277 52450546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52463934 52464188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52468509 52468574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 52546637 52546723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGATGTGAGGTTCTACCCCGCGGCGGCCGGGGACCCTGCCAGCCTGGACTTCGCGCAGTGCCTGGGGT
ACTACGGCTACAGCAAGTTTGGAAATAATAATAACTATATGAATATGGCTGAGGCGAACAATGCGTTCTT
CGCTGCCAGTGAGCAGACATTCCACACACCAAGCCTTGGGGACGAGGAATTCGAAATTCCACCAATCACG
CCTCCTCCAGAGTCAGACCCTGCCCTAGGCATGCCGGATGTACTGCTACCCTTTCAAGCCCTCAGCGATC
CATTGCCTTCCCAGGGAAGTGAATTCACACCCCAGTTTCCCCCTCAAAGCCTGGACCTCCCTTCCATTAC
AATCTCAAGAAATCTCGTGGAACAAGATGGCGTGCTTCATAGCAGTGGGTTGCATATGGATCAGAGCCAC
ACACAAGTGTCCCAGTACCGGCAGGATCCCTCCCTGATCATGCGGTCCATCGTCCACATGACCGATGCTG
CGCGTTCTGGGGTCATGCCTCCTGCCCAGCTCACCACCATCAACCAGTCTCAGCTCAGCGCCCAGTTGGG
GTTGAATTTGGGAGGTGCCAGTATGCCTCACACATCTCCTTCACCTCCAGCAAGCAAATCAGCCACTCCC
TCCCCTTCCAGCTCCATCAATGAAGAGGATGCTGATGAAGCCAACAGAGCCATTGGAGAGAAAAGAGCTG
CTCCAGACTCTGGCAAGAAGCCCAAGACTCCAAAGAAAAAGAAAAAGAAAGATCCCAATGAGCCACAGAA
GCCAGTGTCAGCATATGCCCTGTTTTTCAGAGACACACAGGCTGCAATTAAAGGTCAAAACCCCAATGCA
ACCTTTGGAGAGGTCTCAAAAATTGTAGCATCTATGTGGGACAGCCTTGGAGAAGAACAAAAGCAGGTAT
ATAAAAGGAAAACAGAAGCTGCCAAAAAAGAATACCTGAAGGCCCTGGCGGCATACAGGGCCAGCCTCGT
TTCTAAGGCTGCTGCTGAGTCAGCAGAAGCCCAGACCATCCGTTCTGTTCAGCAGACCCTGGCGTCGACC
AATCTAACATCCTCTCTCCTTCTCAACACTCCACTGTCTCAACATGGAACAGTGTCAGCATCACCTCAGA
CTCTCCAGCAATCCCTCCCTAGGTCAATCGCTCCCAAACCCTTAACCATGAGACTCCCCATGAACCAGAT
TGTCACATCAGTCACCATTGCAGCCAACATGCCCTCGAACATTGGGGCTCCACTGATAAGCTCCATGGGA
ACGACCATGGTTGGCTCAGCACCCTCCACCCAAGTGAGTCCTTCGGTGCAAACCCAGCAGCATCAGATGC
AATTGCAGCAGCAGCAGCAGCAGCAACAACAACAGATGCAACAGATGCAGCAGCAGCAACTCCAGCAGCA
CCAAATGCATCAGCAAATCCAGCAGCAGATGCAGCAGCAGCATTTCCAGCACCACATGCAGCAGCACCTG
CAGCAGCAGCAGCAGCATCTCCAGCAGCAAATTAATCAACAGCAGCTGCAGCAGCAGCTGCAGCAGCGCC
TCCAGCTGCAGCAGCTGCAACACATGCAGCACCAGTCTCAGCCTTCTCCTCGGCAGCACTCCCCTGTCGC
CTCTCAGATAACATCCCCCATCCCTGCCATCGGGAGCCCCCAGCCAGCCTCTCAGCAGCACCAGTCGCAA
ATACAGTCTCAGACACAGACTCAAGTATTATCGCAGGTCAGTATTTTCTGA

Translation (576 aa):
MDVRFYPAAAGDPASLDFAQCLGYYGYSKFGNNNNYMNMAEANNAFFAASEQTFHTPSLGDEEFEIPPIT
PPPESDPALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHMDQSH
TQVSQYRQDPSLIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATP
SPSSSINEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA
TFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLAST
NLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMG
TTMVGSAPSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHL
QQQQQHLQQQINQQQLQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIPAIGSPQPASQQHQSQ
IQSQTQTQVLSQVSIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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