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Report for CCDS54026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54026.1 Public Homo sapiens 16 RIPOR1 24 110 108 CCDS HistoryNCBI Gene:79567Re-query CCDS DB by CCDS ID:54026.1Re-query CCDS DB by GeneID:79567See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422602.8 ENSP00000400099.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422602.8Link to Ensembl Protein Viewer:ENSP00000400099.2Re-query CCDS DB by Nucleotide ID:ENST00000422602Re-query CCDS DB by Protein ID:ENSP00000400099
Original member Current member NCBI NM_001193523.2 NP_001180452.1 Accepted alive Link to Nucleotide Sequence:NM_001193523.2Link to Protein Sequence:NP_001180452.1Re-query CCDS DB by Nucleotide ID:NM_001193523Re-query CCDS DB by Protein ID:NP_001180452Link to BLAST:NP_001180452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180452.1 1239 Q6ZS17-4 1239 100% 0 0

Chromosomal Locations for CCDS 54026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67529823 67529859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67538424 67538550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67538672 67538824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67538990 67539068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67539728 67539751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67539846 67539899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540053 67540205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540300 67540363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540458 67540501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540579 67540704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541430 67541578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541653 67541782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541867 67543264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67543348 67543469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544299 67544431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544695 67544830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544956 67545117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545376 67545534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545664 67545860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545949 67546032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67546141 67546231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67546366 67546463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3720 nt):
ATGACCATCTGGCAGATGCAGAAACAGGCCCAGAGAGGGAGCCCCGCGCGGACTCACTCTATGATGTCCC
TGTCGGTGCGGCCGCAGCGCCGTCTGCTCAGCGCCCGGGTCAATAGGAGCCAGTCCTTCGCAGGCGTCCT
CGGCAGCCACGAGCGGGGGCCCAGGAGTTTCCCGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCC
GCGCTCTCCCGAGTGTCCAGGATGTTTTCCGTGGCTCACCCAGCCGCCAAGGTGCCGCAGCCCGAGCGGC
TGGACCTGGTGTACACGGCGCTGAAGCGGGGCCTGACGGCCTACTTGGAAGTGCACCAGCAGGAGCAAGA
GAAACTCCAGGGGCAGATAAGGGAGTCCAAGAGGAATTCCCGCTTGGGCTTCCTGTATGATCTGGACAAG
CAAGTCAAGTCCATTGAACGCTTCCTGCGACGACTGGAGTTCCATGCCAGCAAGATCGATGAGCTGTATG
AGGCATACTGTGTCCAGCGGCGTCTCCGGGATGGTGCCTACAACATGGTCCGTGCCTACACCACTGGGTC
CCCGGGAAGCCGAGAGGCCCGGGACAGCCTGGCAGAGGCCACTCGGGGGCATCGCGAGTACACGGAGAGC
ATGTGTCTGCTGGAGAGCGAGCTGGAGGCACAGCTGGGCGAGTTTCATCTCCGAATGAAAGGGCTGGCTG
GCTTCGCCAGGCTGTGTGTAGGCGATCAGTATGAGATCTGCATGAAATATGGGCGTCAGCGCTGGAAACT
ACGGGGCCGAATTGAGGGTAGTGGAAAGCAGGTGTGGGACAGTGAAGAAACCATCTTTCTCCCTCTACTC
ACGGAATTTCTGTCTATTAAGGTGACAGAACTGAAGGGCCTGGCCAACCATGTGGTTGTGGGCAGTGTCT
CCTGTGAGACCAAGGACCTGTTTGCCGCCCTGCCCCAGGTTGTGGCTGTGGATATCAATGACCTTGGTAC
CATCAAGCTCAGCCTGGAAGTCACATGGAGCCCCTTCGACAAGGATGACCAGCCCTCAGCTGCTTCTTCT
GTCAACAAGGCCTCCACAGTCACCAAGCGCTTCTCCACCTATAGCCAGAGCCCACCGGACACACCCTCAC
TTCGGGAACAGGCTTTCTATAACATGCTGCGACGGCAGGAGGAGCTGGAGAATGGGACAGCATGGTCCCT
GTCATCTGAATCTTCAGACGACTCATCCAGCCCACAGCTCTCAGGCACTGCCCGCCACTCACCAGCCCCT
AGGCCCCTGGTGCAGCAGCCCGAGCCCCTTCCCATCCAAGTTGCCTTCCGCAGGCCTGAGACCCCCAGCT
CTGGGCCCTTGGATGAGGAGGGGGCCGTGGCCCCAGTCCTGGCAAATGGGCATGCACCCTACAGTCGGAC
TCTGAGCCACATCAGTGAGGCTAGTGTAGATGCTGCCTTGGCTGAGGCTTCAGTGGAGGCCGTTGGCCCA
GAAAGCCTAGCCTGGGGACCTAGCCCACCTACACACCCAGCTCCCACCCATGGAGAGCACCCCAGTCCTG
TTCCTCCTGCCCTGGACCCTGGCCACTCTGCCACAAGCTCTACCCTCGGTACAACAGGCTCTGTCCCCAC
ATCTACAGACCCTGCCCCATCTGCACACCTAGACTCAGTTCATAAGTCCACAGACTCTGGCCCTTCAGAA
CTGCCAGGCCCCACTCACACCACTACAGGCTCTACCTATAGTGCCATTACCACTACCCACAGTGCTCCAA
GCCCCCTCACTCACACTACTACAGGCTCCACCCACAAGCCCATAATCTCTACCCTTACTACTACAGGCCC
TACCCTCAATATCATAGGCCCAGTCCAGACTACCACAAGCCCCACCCACACTATGCCAAGCCCTACCCAT
ACCACAGCAAGCCCCACTCATACTTCCACAAGCCCCACCCATACCCCCACAAGTCCCACCCACAAAACCA
GTATGTCACCTCCCACCACTACAAGTCCTACCCCCAGTGGTATGGGCCTAGTCCAGACTGCCACAAGTCC
CACCCATCCTACCACAAGCCCCACCCATCCCACCACAAGCCCCATCCTTATAAATGTAAGCCCTTCCACT
TCTCTAGAACTTGCTACCCTCTCCAGCCCCTCCAAACACTCAGACCCCACCCTCCCAGGCACTGACTCCC
TTCCCTGTAGTCCCCCAGTCTCCAATTCCTACACTCAGGCAGACCCTATGGCCCCCAGAACTCCCCACCC
AAGTCCTGCCCATTCCAGTAGGAAACCCCTCACAAGCCCTGCCCCAGATCCCTCAGAGTCTACGGTTCAG
AGTCTAAGCCCCACTCCCTCACCCCCAACCCCTGCACCCCAGCATTCAGACCTTTGCCTGGCCATGGCTG
TCCAGACCCCAGTCCCAACGGCAGCCGGAGGGTCTGGGGACAGGAGCCTGGAGGAGGCACTGGGGGCCCT
AATGGCTGCCCTGGATGACTACCGTGGCCAGTTTCCTGAGCTGCAGGGCCTGGAGCAGGAGGTGACCCGC
CTAGAAAGTCTGCTCATGCAGAGACAAGGTCTGACTCGCAGCCGGGCCTCCAGTCTCAGCATCACTGTGG
AGCATGCCTTGGAGAGCTTCAGCTTCCTCAATGAAGACGAAGATGAAGACAATGATGTTCCTGGGGACAG
GCCTCCAAGCAGCCCGGAGGCTGGGGCTGAGGACAGCATAGACTCACCCAGTGCCCGCCCCCTCAGCACG
GGGTGTCCAGCTCTGGATGCTGCCTTGGTCCGGCACCTGTACCACTGCAGTCGCCTCCTGCTGAAACTGG
GCACATTTGGGCCCCTGCGCTGCCAGGAGGCATGGGCCCTGGAGCGGCTGCTGCGGGAAGCCCGAGTACT
GGAGGCAGTATGCGAGTTCAGCAGGCGGTGGGAGATCCCGGCCAGCTCTGCCCAGGAAGTGGTGCAGTTC
TCGGCCTCTCGGCCTGGCTTCCTGACCTTCTGGGACCAGTGCACAGAGAGACTCAGCTGCTTCCTCTGCC
CGGTGGAGCGGGTGCTTCTCACCTTCTGCAACCAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTT
GGCTGAGGCTGTGTGTGTGAAGTTCCTGGAGGATGCCCTGGGGCAGAAGCTGCCCAGAAGGCCCCAGCCA
GGGCCTGGAGAGCAGCTCACAGTCTTCCAGTTCTGGAGTTTTGTGGAAACCTTGGACAGCCCCACCATGG
AGGCCTACGTGACTGAGACCGCTGAGGAGGTGCTACTGGTGCGGAATCTGAACTCGGATGATCAGGCTGT
TGTGCTGAAGGCCCTGAGATTGGCGCCCGAGGGGCGTCTGCGAAGGGACGGGCTGCGGGCCCTCAGCTCC
CTGCTCGTCCATGGCAACAACAAGGTCATGGCTGCTGTCAGCACCCAGCTCCGGAGCCTGTCACTGGGCC
CTACCTTCCGGGAGAGGGCCCTCCTGTGCTTCCTGGACCAGCTGGAGGATGAGGACGTGCAGACTCGAGT
GGCTGGCTGCCTGGCCCTAGGCTGCATCAAGGCTCCCGAGGGCATTGAGCCCCTGGTGTACCTCTGCCAA
ACTGACACAGAAGCTGTGAGGGAAGCTGCCCGGCAAAGCCTACAGCAGTGTGGAGAAGAGGGACAGTCTG
CCCATCGACGGCTGGAGGAGTCCCTGGACGCCCTGCCCCGCATCTTTGGGCCTGGCAGCATGGCCAGCAC
AGCATTCTAA

Translation (1239 aa):
MTIWQMQKQAQRGSPARTHSMMSLSVRPQRRLLSARVNRSQSFAGVLGSHERGPRSFPVFSPPGPPRKPP
ALSRVSRMFSVAHPAAKVPQPERLDLVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDK
QVKSIERFLRRLEFHASKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTES
MCLLESELEAQLGEFHLRMKGLAGFARLCVGDQYEICMKYGRQRWKLRGRIEGSGKQVWDSEETIFLPLL
TEFLSIKVTELKGLANHVVVGSVSCETKDLFAALPQVVAVDINDLGTIKLSLEVTWSPFDKDDQPSAASS
VNKASTVTKRFSTYSQSPPDTPSLREQAFYNMLRRQEELENGTAWSLSSESSDDSSSPQLSGTARHSPAP
RPLVQQPEPLPIQVAFRRPETPSSGPLDEEGAVAPVLANGHAPYSRTLSHISEASVDAALAEASVEAVGP
ESLAWGPSPPTHPAPTHGEHPSPVPPALDPGHSATSSTLGTTGSVPTSTDPAPSAHLDSVHKSTDSGPSE
LPGPTHTTTGSTYSAITTTHSAPSPLTHTTTGSTHKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTH
TTASPTHTSTSPTHTPTSPTHKTSMSPPTTTSPTPSGMGLVQTATSPTHPTTSPTHPTTSPILINVSPST
SLELATLSSPSKHSDPTLPGTDSLPCSPPVSNSYTQADPMAPRTPHPSPAHSSRKPLTSPAPDPSESTVQ
SLSPTPSPPTPAPQHSDLCLAMAVQTPVPTAAGGSGDRSLEEALGALMAALDDYRGQFPELQGLEQEVTR
LESLLMQRQGLTRSRASSLSITVEHALESFSFLNEDEDEDNDVPGDRPPSSPEAGAEDSIDSPSARPLST
GCPALDAALVRHLYHCSRLLLKLGTFGPLRCQEAWALERLLREARVLEAVCEFSRRWEIPASSAQEVVQF
SASRPGFLTFWDQCTERLSCFLCPVERVLLTFCNQYGARLSLRQPGLAEAVCVKFLEDALGQKLPRRPQP
GPGEQLTVFQFWSFVETLDSPTMEAYVTETAEEVLLVRNLNSDDQAVVLKALRLAPEGRLRRDGLRALSS
LLVHGNNKVMAAVSTQLRSLSLGPTFRERALLCFLDQLEDEDVQTRVAGCLALGCIKAPEGIEPLVYLCQ
TDTEAVREAARQSLQQCGEEGQSAHRRLEESLDALPRIFGPGSMASTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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