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Report for CCDS54056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54056.1 Public Homo sapiens 16 RNF166 24 110 108 CCDS HistoryNCBI Gene:115992Re-query CCDS DB by CCDS ID:54056.1Re-query CCDS DB by GeneID:115992See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541206.6 ENSP00000440454.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541206.6Link to Ensembl Protein Viewer:ENSP00000440454.2Re-query CCDS DB by Nucleotide ID:ENST00000541206Re-query CCDS DB by Protein ID:ENSP00000440454
Original member Current member EBI ENST00000537718.6 ENSP00000446301.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537718.6Link to Ensembl Protein Viewer:ENSP00000446301.2Re-query CCDS DB by Nucleotide ID:ENST00000537718Re-query CCDS DB by Protein ID:ENSP00000446301
Original member Current member NCBI NM_001171816.2 NP_001165287.1 Accepted alive Link to Nucleotide Sequence:NM_001171816.2Link to Protein Sequence:NP_001165287.1Re-query CCDS DB by Nucleotide ID:NM_001171816Re-query CCDS DB by Protein ID:NP_001165287Link to BLAST:NP_001165287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165287.1 128 Q96A37-2 128 100% 0 0

Chromosomal Locations for CCDS 54056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88697568 88697633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88698502 88698609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88698971 88699085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88699620 88699717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGAGAGTGCACATTTCGTCCTGCCTGAAGGTCCAGGAGCAGATGGCCAACTGCCCCAAGTTCGTCCCCG
TGGTGCCCACATCACAGCCTATCCCCAGCAACATCCCCAACAGGTCCACCTTCGCCTGCCCGTACTGTGG
TGCCCGCAACCTGGACCAGCAGGAGCTGGTGAAGCACTGTGTGGAAAGCCACCGCAGCGACCCCAACCGC
GTGGTGTGCCCCATCTGCTCGGCAATGCCCTGGGGGGACCCCAGCTACAAGAGCGCCAACTTCCTGCAGC
ACCTGCTTCACCGACACAAGTTCTCCTACGACACCTTTGTGGACTACAGTATTGACGAGGAGGCCGCCTT
CCAGGCTGCTCTGGCCCTGTCTCTCTCTGAGAACTGA

Translation (128 aa):
MRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNR
VVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSLSEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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