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Report for CCDS54333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54333.1 Public Homo sapiens 2 KLF11 24 110 108 CCDS HistoryNCBI Gene:8462Re-query CCDS DB by CCDS ID:54333.1Re-query CCDS DB by GeneID:8462See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535335.1 ENSP00000442722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535335.1Link to Ensembl Protein Viewer:ENSP00000442722.1Re-query CCDS DB by Nucleotide ID:ENST00000535335Re-query CCDS DB by Protein ID:ENSP00000442722
Original member Current member EBI ENST00000540845.5 ENSP00000444690.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540845.5Link to Ensembl Protein Viewer:ENSP00000444690.1Re-query CCDS DB by Nucleotide ID:ENST00000540845Re-query CCDS DB by Protein ID:ENSP00000444690
Original member Current member NCBI NM_001177716.2 NP_001171187.1 Accepted alive Link to Nucleotide Sequence:NM_001177716.2Link to Protein Sequence:NP_001171187.1Re-query CCDS DB by Nucleotide ID:NM_001177716Re-query CCDS DB by Protein ID:NP_001171187Link to BLAST:NP_001171187.1
Original member Current member NCBI NM_001177718.2 NP_001171189.1 Accepted alive Link to Nucleotide Sequence:NM_001177718.2Link to Protein Sequence:NP_001171189.1Re-query CCDS DB by Nucleotide ID:NM_001177718Re-query CCDS DB by Protein ID:NP_001171189Link to BLAST:NP_001171189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171187.1 495 O14901-2 495 100% 0 0
NP_001171189.1 495 O14901-2 495 100% 0 0

Chromosomal Locations for CCDS 54333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10046159 10046419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10047650 10048595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10052227 10052507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGACATATGTGAGTCCATCCTGGAGAGGAAGCGGCATGACAGCGAAAGGTCTACTTGCAGCATCTTGG
AGCAGACAGACATGGAAGCTGTCGAGGCTCTTGTTTGTATGAGCTCCTGGGGTCAAAGATCCCAGAAAGG
TGACCTGTTGCGGATAAGACCCCTCACGCCTGTCTCTGACTCTGGGGATGTCACCACCACTGTGCATATG
GATGCAGCCACACCTGAACTACCAAAAGACTTCCATTCTTTATCGACTCTGTGCATAACTCCTCCTCAGA
GCCCTGATCTCGTGGAGCCATCGACAAGGACACCTGTTTCTCCCCAAGTAACAGATTCCAAAGCATGTAC
AGCCACGGATGTTCTCCAGTCCTCTGCCGTAGTGGCCAGAGCTCTGAGCGGGGGCGCGGAGAGGGGCTTG
CTGGGTTTGGAGCCAGTGCCCAGCTCTCCCTGCAGGGCCAAGGGGACTAGCGTGATCCGACACACTGGGG
AGAGCCCTGCTGCCTGCTTTCCCACCATCCAGACTCCAGATTGCCGGCTTTCTGACAGCAGAGAAGGAGA
AGAGCAGCTTCTGGGACACTTTGAAACTTTGCAGGACACACACCTCACGGACAGTTTACTCAGCACTAAC
TTGGTGTCCTGTCAGCCCTGCTTGCACAAGTCTGGTGGCCTGCTGCTCACTGACAAAGGCCAGCAGGCAG
GGTGGCCTGGTGCAGTTCAGACTTGCTCACCAAAGAATTATGAAAATGACCTGCCCAGGAAAACCACCCC
TCTGATTTCTGTCTCTGTCCCTGCTCCCCCTGTCCTTTGCCAGATGATCCCTGTGACTGGACAAAGTAGC
ATGTTACCAGCTTTTTTGAAGCCCCCTCCCCAGTTGTCTGTGGGGACTGTGAGACCCATCCTAGCTCAGG
CTGCTCCAGCGCCTCAACCTGTGTTCGTGGGACCTGCTGTGCCTCAGGGAGCTGTGATGTTGGTCCTGCC
CCAGGGAGCCCTCCCTCCGCCTGCCCCCTGTGCAGCCAATGTCATGGCTGCCGGGAATACCAAGTTGTTG
CCCCTTGCCCCTGCTCCAGTGTTCATCACCTCTAGCCAAAACTGTGTCCCTCAGGTAGACTTTTCCCGAA
GGAGGAACTATGTATGCAGCTTCCCAGGTTGCCGGAAGACCTACTTCAAAAGTTCCCACCTTAAGGCCCA
TCTTCGCACTCACACAGGGGAGAAGCCTTTCAACTGCAGCTGGGATGGCTGTGATAAAAAGTTTGCTCGT
TCGGATGAGCTGTCACGCCACCGCAGAACTCACACAGGGGAGAAGAAGTTTGTGTGCCCGGTGTGTGACC
GACGTTTCATGCGCAGTGACCACCTGACGAAGCATGCCCGGCGCCACATGACGACCAAGAAGATCCCAGG
CTGGCAGGCAGAGGTTGGCAAGCTGAACAGAATCGCCTCTGCAGAGAGCCCGGGGAGCCCACTGGTGAGC
ATGCCAGCCTCTGCCTGA

Translation (495 aa):
MDICESILERKRHDSERSTCSILEQTDMEAVEALVCMSSWGQRSQKGDLLRIRPLTPVSDSGDVTTTVHM
DAATPELPKDFHSLSTLCITPPQSPDLVEPSTRTPVSPQVTDSKACTATDVLQSSAVVARALSGGAERGL
LGLEPVPSSPCRAKGTSVIRHTGESPAACFPTIQTPDCRLSDSREGEEQLLGHFETLQDTHLTDSLLSTN
LVSCQPCLHKSGGLLLTDKGQQAGWPGAVQTCSPKNYENDLPRKTTPLISVSVPAPPVLCQMIPVTGQSS
MLPAFLKPPPQLSVGTVRPILAQAAPAPQPVFVGPAVPQGAVMLVLPQGALPPPAPCAANVMAAGNTKLL
PLAPAPVFITSSQNCVPQVDFSRRRNYVCSFPGCRKTYFKSSHLKAHLRTHTGEKPFNCSWDGCDKKFAR
SDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRHMTTKKIPGWQAEVGKLNRIASAESPGSPLVS
MPASA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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