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Report for CCDS54405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54405.1 Public Homo sapiens 2 ORC4 24 110 108 CCDS HistoryNCBI Gene:5000Re-query CCDS DB by CCDS ID:54405.1Re-query CCDS DB by GeneID:5000See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540442.5 ENSP00000438326.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540442.5Link to Ensembl Protein Viewer:ENSP00000438326.1Re-query CCDS DB by Nucleotide ID:ENST00000540442Re-query CCDS DB by Protein ID:ENSP00000438326
Original member Current member NCBI NM_001190882.3 NP_001177811.1 Accepted alive Link to Nucleotide Sequence:NM_001190882.3Link to Protein Sequence:NP_001177811.1Re-query CCDS DB by Nucleotide ID:NM_001190882Re-query CCDS DB by Protein ID:NP_001177811Link to BLAST:NP_001177811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177811.1 362 O43929-3 362 100% 0 0

Chromosomal Locations for CCDS 54405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 147935510 147935698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147938146 147938213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147938298 147938393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147939140 147939248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147943436 147943522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147948051 147948224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147952373 147952524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147955347 147955395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147958298 147958383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147958791 147958866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147972739 147972741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGTTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTC
ACTTAAATGGACTGCTGCAGATCAATGACAAAATCGCCCTAAAGGAAATCACAAGGCAGTTAAATCTGGA
AAATGTAGTTGGAGATAAAGTTTTTGGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTAAAA
AAAGGTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATA
AAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAATAGCAGTTATTGG
TCTTACATGTAGATTGGATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCAAGATTTTCTCACCGGCAG
ATACACTTAATGAATTCATTTGGTTTTCCACAGTATGTTAAAATATTTAAAGAACAGTTATCTCTACCTG
CAGAGTTTCCAGACAAGGTTTTTGCTGAGAAGTGGAATGAAAATGTTCAGTATCTCTCAGAAGATAGAAG
TGTGCAAGAAGTACTACAGAAGCATTTCAATATCAGCAAAAACCTGCGGTCATTACACATGCTATTGATG
CTTGCTTTAAATCGAGTAACAGCATCGCACCCATTTATGACTGCCGTAGATCTAATGGAAGCAAGCCAAC
TGTGTAGCATGGACTCGAAAGCAAATATTGTACATGGTCTATCAGTCTTGGAAATCTGTCTTATAATAGC
AATGAAACATTTAAATGACATCTATGAGGAAGAGCCATTTAATTTTCAAATGGTCTATAATGAGTTTCAG
AAGTTTGTTCAAAGGAAAGCACATTCCGTTTATAATTTTGAAAAACCTGTTGTCATGAAGGCTTTTGAAC
ACTTGCAGCAATTAGAATTAATAAAGCCCATGGAAAGAACTTCAGGAAATTCACAGAGAGAGTACCAGCT
GATGAAACTGCTTTTGGATAATACTCAAATTATGAATGCTCTGCAGAAATATCCCAACTGTCCTACAGAT
GTGAGGCAGTGGGCAACATCCTCACTAAGCTGGTTATGA

Translation (362 aa):
MLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALK
KGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQ
IHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLM
LALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQ
KFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNALQKYPNCPTD
VRQWATSSLSWL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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