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Report for CCDS54536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54536.1 Public Homo sapiens 22 PACSIN2 24 110 108 CCDS HistoryNCBI Gene:11252Re-query CCDS DB by CCDS ID:54536.1Re-query CCDS DB by GeneID:11252See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54536.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337959.8 ENSP00000338379.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337959.8Link to Ensembl Protein Viewer:ENSP00000338379.4Re-query CCDS DB by Nucleotide ID:ENST00000337959Re-query CCDS DB by Protein ID:ENSP00000338379
Original member Current member EBI ENST00000407585.5 ENSP00000385952.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407585.5Link to Ensembl Protein Viewer:ENSP00000385952.1Re-query CCDS DB by Nucleotide ID:ENST00000407585Re-query CCDS DB by Protein ID:ENSP00000385952
Original member Current member NCBI NM_001184971.1 NP_001171900.1 Accepted alive Link to Nucleotide Sequence:NM_001184971.1Link to Protein Sequence:NP_001171900.1Re-query CCDS DB by Nucleotide ID:NM_001184971Re-query CCDS DB by Protein ID:NP_001171900Link to BLAST:NP_001171900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171900.1 445 Q9UNF0-2 445 100% 0 0

Chromosomal Locations for CCDS 54536.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42871357 42871469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42876137 42876333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42879048 42879169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42882184 42882304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42884386 42884561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42888643 42888798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42890947 42891182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42893457 42893613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 42912021 42912080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGTCTGTCACATATGATGATTCCGTTGGAGTAGAAGTGTCCAGCGACAGCTTCTGGGAGGTCGGGAACT
ACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCTGCATGA
GCGGGCGCGCATCGAGAAGGCGTATGCGCAGCAGCTCACTGAGTGGGCCCGGCGCTGGAGGCAGCTCGTG
GAGAAAGGGCCCCAGTACGGGACCGTGGAGAAGGCCTGGATGGCCTTCATGTCCGAGGCAGAGAGGGTGA
GCGAGCTGCACCTCGAGGTGAAGGCCTCACTGATGAACGATGACTTCGAGAAGATCAAGAACTGGCAGAA
GGAAGCCTTTCACAAGCAGATGATGGGCGGCTTCAAGGAGACCAAGGAAGCTGAGGACGGCTTTCGGAAG
GCACAGAAGCCCTGGGCCAAGAAGCTGAAAGAGGTAGAAGCAGCAAAGAAAGCCCACCATGCAGCGTGCA
AAGAGGAGAAGCTGGCTATCTCACGAGAAGCCAACAGCAAGGCAGACCCATCCCTCAACCCTGAACAGCT
CAAGAAATTGCAAGACAAAATAGAAAAGTGCAAGCAAGATGTTCTTAAGACCAAAGAGAAGTATGAGAAG
TCCCTGAAGGAACTCGACCAGGGCACACCCCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAGTGCC
AGCAGTTCGAGGAGAAACGCCTTCGCTTCTTCCGGGAGGTTCTGCTGGAGGTTCAGAAGCACCTAGACCT
GTCCAATGTGGCTGGCTACAAAGCCATTTACCATGACCTGGAGCAGAGCATCAGAGCAGCTGATGCAGTG
GAGGACCTGAGGTGGTTCCGAGCCAATCACGGGCCGGGCATGGCCATGAACTGGCCGCAGTTTGAGGAGT
GGTCCGCAGACCTGAATCGAACCCTCAGCCGGAGAGAGAAGAAGAAGGCCACTGACGGCGTCACCCTGAC
GGGCATCAACCAGACAGGCGACCAGTCTCTGCCGAGTAAGCCCAGCAGTGTGAGCAGCTACGAGAAGACC
CAGAGCTATCCCACCGACTGGTCAGACGATGAGTCTAACAACCCCTTCTCCTCCACGGATGCCAATGGGG
ACTCGAATCCATTCGACGACGACGCCACCTCGGGGACGGAAGTGCGAGTCCGGGCCCTGTATGACTATGA
GGGGCAGGAGCATGATGAGCTGAGCTTCAAGGCTGGGGATGAGCTGACCAAGATGGAGGACGAGGATGAG
CAGGGCTGGTGCAAGGGACGCTTGGACAACGGGCAAGTTGGCCTATACCCGGCAAATTATGTGGAGGCGA
TCCAGTGA

Translation (445 aa):
MSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLV
EKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRK
AQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEK
SLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAV
EDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSVSSYEKT
QSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDE
QGWCKGRLDNGQVGLYPANYVEAIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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