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Report for CCDS54668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54668.1 Public Homo sapiens 3 IFT80 24 110 108 CCDS HistoryNCBI Gene:57560Re-query CCDS DB by CCDS ID:54668.1Re-query CCDS DB by GeneID:57560See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54668.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000483465.5 ENSP00000418196.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483465.5Link to Ensembl Protein Viewer:ENSP00000418196.1Re-query CCDS DB by Nucleotide ID:ENST00000483465Re-query CCDS DB by Protein ID:ENSP00000418196
Original member Current member EBI ENST00000496589.5 ENSP00000420646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496589.5Link to Ensembl Protein Viewer:ENSP00000420646.1Re-query CCDS DB by Nucleotide ID:ENST00000496589Re-query CCDS DB by Protein ID:ENSP00000420646
Original member Current member NCBI NM_001190241.2 NP_001177170.1 Accepted alive Link to Nucleotide Sequence:NM_001190241.2Link to Protein Sequence:NP_001177170.1Re-query CCDS DB by Nucleotide ID:NM_001190241Re-query CCDS DB by Protein ID:NP_001177170Link to BLAST:NP_001177170.1
Original member Current member NCBI NM_001190242.2 NP_001177171.1 Accepted alive Link to Nucleotide Sequence:NM_001190242.2Link to Protein Sequence:NP_001177171.1Re-query CCDS DB by Nucleotide ID:NM_001190242Re-query CCDS DB by Protein ID:NP_001177171Link to BLAST:NP_001177171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177170.1 640 Q9P2H3-2 640 100% 0 0
NP_001177171.1 640 Q9P2H3-2 640 100% 0 0

Chromosomal Locations for CCDS 54668.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 160258525 160258635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160268413 160268536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160277306 160277478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160277581 160277670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160279193 160279364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160280667 160280814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160282478 160282613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160285804 160285868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160300883 160301046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160303915 160303989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160307663 160307781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160319760 160319939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160356013 160356150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160357489 160357578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160366043 160366152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 160375812 160375839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA
AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTG
GAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGT
GAAGACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATC
CCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTT
GTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGG
TCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAAC
AACATTGGGAGTGGAAAAATTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCT
TAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTA
GTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATC
TCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTAT
CTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTG
AATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCT
TCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTT
GGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGAT
CTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATA
CTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTA
CCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTT
AGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGG
TTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGC
TGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAAT
CGAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATT
CTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGA
GGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAAC
TGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAA
AGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAAT
AGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGC
CAATCCAGCAAGAGTATAGGTTTAAAGCCCTAA

Translation (640 aa):
MLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAG
EDCKYKVWDSYGRPLYNSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAW
SIDGTQIAGACGNGHVVFAHVVEQHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHL
VVSTSLQCYVFSTKNWNTPIIFDLKEGTVSLILQAERHFLLVDGSSIYLYSYEGRFISSPKFPGMRTDIL
NAQTVSLSNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGLTNDRKIAFIDKNRD
LCITSVKRFGKEEQIIKLGTMVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEF
SKNPHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN
RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQAIQININLYN
WERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLHYAEGLQIDWEKIKAKIEMEITKEREQSSSS
QSSKSIGLKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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