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Report for CCDS54819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54819.1 Public Homo sapiens 4 PALLD 24 110 108 CCDS HistoryNCBI Gene:23022Re-query CCDS DB by CCDS ID:54819.1Re-query CCDS DB by GeneID:23022See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512127.5 ENSP00000426947.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512127.5Link to Ensembl Protein Viewer:ENSP00000426947.1Re-query CCDS DB by Nucleotide ID:ENST00000512127Re-query CCDS DB by Protein ID:ENSP00000426947
Original member Current member NCBI NM_001166109.2 NP_001159581.1 Accepted alive Link to Nucleotide Sequence:NM_001166109.2Link to Protein Sequence:NP_001159581.1Re-query CCDS DB by Nucleotide ID:NM_001166109Re-query CCDS DB by Protein ID:NP_001159581Link to BLAST:NP_001159581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159581.1 777 Q8WX93-8 777 100% 0 0

Chromosomal Locations for CCDS 54819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 168681391 168681398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168682998 168683103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168685485 168685559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168690603 168690744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168691269 168691292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168709028 168709147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168711581 168711923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168890922 168891057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168894579 168894677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168898493 168898714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168903757 168903906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168913927 168914021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168915895 168916027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168921534 168921741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924255 168924420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924945 168925078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168926213 168926385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGCCACAAGCTCAAAAGAAAACAACTTCTGTTTCCTTGACAATAGGATCATCATCTCCAAAGACAGGGG
TGACCACAGCTGTGATTCAACCACTGTCTGTCCCTGTGCAACAGGTTCACAGTCCAACTTCATATCTCTG
CCGACCTGATGGAACCACTACTGCCTACTTTCCTCCTGTTTTTACAAAGGAACTGCAAAACACAGCCGTG
GCGGAAGGCCAGGTGGTGGTTCTGGAGTGCCGGGTCCGTGGGGCACCCCCTCTGCAGGTCCAGTGGTTTC
GGCAAGGGAGTGAAATCCAAGACTCTCCAGATTTCCGAATTCTACAGAAAAAACCTAGATCTACAGCTGA
ACCTGAGGAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGATGCAGGGATCTTTACATGTTCA
GCAAGAAATGATTATGGATCAGCAACCAGCACTGCCCAGCTGGTTGTCACCTCAGCCAACACTGAAAACT
GTAGTTACGAGTCAATGGGAGAATCCAACAATGACCACTTCCAACACTTTCCACCTCCCCCTCCAATCTT
GGAGACAAGTTCCTTGGAGTTGGCTTCAAAGAAACCATCTGAGATCCAGCAGGTGAACAACCCTGAGTTA
GGCCTGAGCAGGGCAGCCCTTCAAATGCAATTCAATGCTGCTGAGAGGGAAACGAACGGAGTCCATCCCA
GCCGTGGAGTAAATGGACTGATTAACGGCAAAGCTAACAGTAATAAATCTCTTCCAACACCAGCTGTCCT
GCTTTCACCCACTAAGGAGCCACCACCTCTGCTTGCCAAACCAAAACTAGGATTTCCAAAGAAGGCCAGT
AGAACTGCTAGAATAGCCTCCGATGAGGAAATTCAAGGCACAAAGGATGCTGTTATTCAAGACCTGGAAC
GAAAACTTCGCTTCAAGGAGGACCTCCTGAACAATGGCCAGCCGAGGTTAACATACGAAGAAAGAATGGC
TCGTCGACTGCTAGGTGCTGACAGTGCAACTGTCTTTAATATTCAGGAGCCAGAAGAGGAAACAGCTAAT
CAGGAATACAAAGTCTCCAGCTGTGAACAGAGACTCATCAGTGAAATAGAGTACAGGCTAGAAAGGTCTC
CTGTGGATGAATCAGGTGATGAAGTTCAGTATGGAGATGTGCCTGTGGAAAATGGAATGGCACCATTCTT
TGAGATGAAGCTGAAACATTACAAGATCTTTGAGGGAATGCCAGTAACTTTCACATGTAGAGTGGCTGGA
AATCCAAAGCCAAAGATCTATTGGTTTAAAGATGGGAAGCAGATCTCTCCAAAGAGTGATCACTACACCA
TTCAAAGAGATCTCGATGGGACCTGCTCCCTCCATACCACAGCCTCCACCCTAGATGATGATGGGAATTA
TACAATTATGGCTGCAAACCCTCAGGGCCGCATCAGTTGTACTGGACGGCTAATGGTACAGGCTGTCAAC
CAAAGAGGTCGAAGTCCCCGGTCTCCCTCAGGCCATCCTCATGTCAGAAGGCCTCGTTCTAGATCAAGGG
ACAGTGGAGACGAAAATGAACCAATTCAGGAGCGATTCTTCAGACCTCACTTCTTGCAGGCTCCTGGAGA
TCTGACTGTTCAAGAAGGAAAACTCTGCAGAATGGACTGCAAAGTCAGTGGGTTACCAACCCCAGATCTA
AGCTGGCAACTAGATGGAAAGCCCGTACGCCCTGACAGTGCTCACAAGATGCTGGTGCGTGAGAACGGGG
TGCACTCTCTGATCATAGAGCCAGTCACGTCACGTGATGCCGGCATCTACACATGTATAGCTACCAACCG
AGCAGGACAGAACTCATTCAGCCTGGAGCTTGTGGTTGCTGCTAAAGAAGCACACAAACCCCCTGTGTTT
ATTGAGAAGCTCCAAAACACAGGAGTTGCTGATGGGTACCCAGTGCGGCTGGAATGTCGTGTATTGGGAG
TGCCACCACCTCAGATATTTTGGAAGAAAGAAAATGAATCACTCACTCACAGCACTGACCGAGTGAGCAT
GCACCAGGACAACCACGGCTACATCTGCCTGCTCATTCAGGGAGCCACAAAAGAAGATGCTGGGTGGTAT
ACTGTGTCAGCCAAGAATGAAGCAGGGATTGTGTCCTGTACTGCCAGGCTGGACGTTTACACCCAGTGGC
ATCAGCAGTCACAGAGCACCAAGCCAAAAAAAGTACGGCCCTCAGCCAGTCGCTATGCAGCACTTTCGGA
CCAGGGACTAGACATCAAAGCAGCGTTCCAACCTGAGGCCAACCCATCTCACCTGACACTGAATACTGCC
TTGGTAGAAAGTGAGGACCTGTAA

Translation (777 aa):
MPQAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTKELQNTAV
AEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAEPEEICTLVIAETFPEDAGIFTCS
ARNDYGSATSTAQLVVTSANTENCSYESMGESNNDHFQHFPPPPPILETSSLELASKKPSEIQQVNNPEL
GLSRAALQMQFNAAERETNGVHPSRGVNGLINGKANSNKSLPTPAVLLSPTKEPPPLLAKPKLGFPKKAS
RTARIASDEEIQGTKDAVIQDLERKLRFKEDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETAN
QEYKVSSCEQRLISEIEYRLERSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYKIFEGMPVTFTCRVAG
NPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN
QRGRSPRSPSGHPHVRRPRSRSRDSGDENEPIQERFFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL
SWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKEAHKPPVF
IEKLQNTGVADGYPVRLECRVLGVPPPQIFWKKENESLTHSTDRVSMHQDNHGYICLLIQGATKEDAGWY
TVSAKNEAGIVSCTARLDVYTQWHQQSQSTKPKKVRPSASRYAALSDQGLDIKAAFQPEANPSHLTLNTA
LVESEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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