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Report for CCDS54894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54894.1 Public Homo sapiens 5 GRAMD2B 24 110 108 CCDS HistoryNCBI Gene:65983Re-query CCDS DB by CCDS ID:54894.1Re-query CCDS DB by GeneID:65983See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544396.5 ENSP00000444049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544396.5Link to Ensembl Protein Viewer:ENSP00000444049.1Re-query CCDS DB by Nucleotide ID:ENST00000544396Re-query CCDS DB by Protein ID:ENSP00000444049
Original member Current member NCBI NM_001146320.3 NP_001139792.1 Accepted alive Link to Nucleotide Sequence:NM_001146320.3Link to Protein Sequence:NP_001139792.1Re-query CCDS DB by Nucleotide ID:NM_001146320Re-query CCDS DB by Protein ID:NP_001139792Link to BLAST:NP_001139792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139792.1 328 Q96HH9-5 328 100% 0 0

Chromosomal Locations for CCDS 54894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 126465543 126465545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126472238 126472304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126473265 126473368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126477692 126477787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126480456 126480527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126480627 126480707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126483463 126483574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126484402 126484524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126485686 126485773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126486873 126486977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126488799 126488892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 126492915 126492956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGTACAAGGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAA
GCTTTACCTGTGCTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTG
TTTTCATTCCAAAGTCTTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAG
AAAACCAAAACTGCTCTTCTAGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTG
TCTCCTTACTCTCCAGAGATTCAACTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAG
TGTTGGTAACAGTCCCAATCCATCTTCTGCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCT
CTGGATTTCAATGATGAATTCTCAGATCTGGATGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGAT
ATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGAACTCTCGAGATTTCCATGCGACAGAATCCCAAAC
AGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGGGCAGATGCCCATGTGAACAGAGTACCTGAA
GGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGTTGGAATCTTACATAAAGTCAAGTCTC
AGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTGTCTGTGCACTAATCATCTCGAC
CTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTAACCTCCATTGTGGACACC
CATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGTGGAGGTTCTCTGTC
AAGAGCTTACAGCTAACATAGTGAAATTAGAAAAGATACAAAATAACTTACAGAAGTTGCTTGAGAATGG
TGACTGA

Translation (328 aa):
MYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTLIK
KTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLP
LDFNDEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPE
GKAKSLPVQGLSETVGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDT
HNTEQAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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