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Report for CCDS55063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55063.1 Public Homo sapiens 6 NHSL1 24 110 108 CCDS HistoryNCBI Gene:57224Re-query CCDS DB by CCDS ID:55063.1Re-query CCDS DB by GeneID:57224See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427025.6 ENSP00000394546.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427025.6Link to Ensembl Protein Viewer:ENSP00000394546.2Re-query CCDS DB by Nucleotide ID:ENST00000427025Re-query CCDS DB by Protein ID:ENSP00000394546
Original member Current member NCBI NM_020464.2 NP_065197.1 Accepted alive Link to Nucleotide Sequence:NM_020464.2Link to Protein Sequence:NP_065197.1Re-query CCDS DB by Nucleotide ID:NM_020464Re-query CCDS DB by Protein ID:NP_065197Link to BLAST:NP_065197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065197.1 1610 Q5SYE7-1 1610 100% 0 0

Chromosomal Locations for CCDS 55063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138424081 138424816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138429711 138429843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138430393 138433680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138447001 138447193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138473306 138473433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138496219 138496371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138571710 138571911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4833 nt):
ATGAAAAAGGAAGGCTCTTCAGGTTCCTTCAGACTCCAGCCGAATACAGGTTCTCTCTCACGTGCTGTAA
GTTGGATAAATTTCTCCTCCTTGTCCAGGCAGACAAAGAGGCTGTTTCGCAGTGATGGAGAGCTCTCGGT
TTGTGGGCAGCAGGTGGAAGTGGATGACGAAAACTGGATATACAGAGCCCAGCCCAGAAAAGCGGTTTCC
AACCTAGATGAGGAAAGCCGATGGACAGTCCACTACACTGCCCCGTGGCACCAGCAGGAGAATGTGTTCC
TTCCCACCACAAGACCCCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTACT
GAGGGAATGCGATAAGTTGCGGCATGATGGCTACCGCAGTTCTCAGTACTACTCTCAGGGACCCACCTTT
GCGGCCAACGCCAGCCCATTCTGTGATGATTACCAAGATGAAGATGAAGAAACAGATCAAAAGTGTTCTC
TGTCTTCATCAGAAGAAGAAAGATTTATTTCCATCAGGAGACCTAAAACACCAGCCTCAAGTGACTTCTC
CGACCTTAATACTCAGACGAACTGGACCAAGTCGCTTCCACTGCCAACACCAGAAGAGAAGATGCGACAG
CAAGCCCAAACAGTCCAGGCTGACGTGGTGCCTATTAACATAACTGCATCAGGCACTGGCCAAGATGATG
CTGATGGCCACTCAGTGTACACCCCTGATCACTACTCTACACTAGGAAGGTTCAATAGCTGTCGGTCTGC
TGGGCAGCGCTCAGAAACCAGGGACTCCAGCTGTCAGACGGAGGATGTGAAGGTCGTACCACCTTCCATG
AGGAGAATCAGGGCACAGAAGGGGCAAGGCATTGCTGCCCAGATGGGCCACTTCTCAGGTTCCTCTGGCA
ACATGTCTGTGCTGAGCGATTCTGCAGGGATCGTATTCCCTTCCCGCCTTGACAGTGATGCTGGCTTCCA
TAGTCTTCCGCGTTCTGGAGCAAGGGCAAACATTCAGTCCCTTGAGCCGAGGCTGGGTGCCCTCGGCCCT
GCAGGAGACATGAATGGCACTTTCCTCTACCAGAGAGGTCACCCACAAGCAGATGAAAACTTAGGCCATT
TAGGAGGTGCCTCAGGGACTGGAACACTTTTGAGACCCAAATCCCAGGAGTTGAGACACTTCGAGAGTGA
AAATATAATGAGCCCAGCGTGTGTGGTTTCTCCTCATGCAACCTACTCCACCAGCATCATCCCAAATGCC
ACACTGTCTTCCTCTTCCGAGGTCATCGCTATTCCCACTGCTCAGAGTGCGGGACAGCGGGAAAGTAAAA
GTTCTGGCTCATCACATGCAAGGATAAAATCCAGAGACCACCTCATCTCCAGGCATGCTGTGAAAGGTGA
TCCTCAGTCTCCCGGTCGCCACTGGAATGAGGGCCATGCCACCATTCTTTCACAGGACTTAGACCCTCAT
TCCCCTGGTGAACCCGCACTGTTGTCCCTCTGTGACTCAGCCGTCCCTCTAAATGCTCCAGCAAATAGGG
AGAATGGGTCCCAAGCTATGCCGTATAATTGTAGAAACAACCTGGCCTTCCCAGCCCACCCCCAAGATGT
GGATGGCAAGAGTGAATCTAGTTATTCAGGGGGCGGAGGGCACAGCAGCTCGGAGCCCTGGGAATACAAA
TCCTCAGGTAATGGAAGGGCATCCCCCCTGAAGCCGCATTTAGCAACTCCTGGCTATTCCACTCCCACAA
GTAACATGAGCAGCTGCAGTTTGGACCAAACGTCCAACAAAGAGGATGCTGGGTCGCTGTATTCTGAGGA
CCACGATGGCTACTGTGCATCTGTGCACACTGACTCTGGACATGGATCTGGGAATCTGTGCAATAGCAGT
GATGGCTTTGGGAACCCCAGGCACAGCGTGATCAATGTTTTTGTTGGAAGAGCTCAGAAAAACCAAGGGG
ACCGGTCCAATTACCAGGATAAATCCCTATCAAGAAACATCTCTTTGAAGAAAGCAAAGAAGCCTCCCCT
GCCACCCTCCCGGACAGACTCCCTCCGCAGGATTCCCAAGAAGAGCAGCCAGTGCAACGGGCAGGTGCTC
AACGAGAGCCTGATCGCCACACTCCAGCACTCGCTGCAGCTGAGCCTCCCAGGCAAGAGTGGCAGCTCGC
CCTCCCAGAGCCCCTGCAGTGACTTGGAAGAGCCCTGGCTGCCCCGCTCCCGGAGCCAGAGCACAGTTAG
TGCTGGCAGCAGCATGACTTCCGCCACCACCCCCAATGTCTACTCCCTGTGCGGGGCCACGCCATCGCAG
AGTGACACAAGCAGCGTCAAGTCAGAGTACACGGACCCCTGGGGTTATTACATTGACTACACGGGCATGC
AGGAAGATCCGGGGAACCCGGCAGGGGGCTGTTCAACCAGCAGTGGGGTGCCCACTGGGAACGGGCCAGT
CCGCCATGTCCAAGAAGGGTCCAGAGCCACAATGCCCCAAGTGCCCGGTGGTTCAGTCAAACCAAAGATC
ATGTCACCAGAGAAGTCACACAGAGTCATTTCTCCATCCAGTGGGTATTCCAGCCAGTCGAATACACCCA
CAGCACTCACCCCTGTGCCTGTGTTTTTAAAATCAGTGTCACCAGCAAACGGGAAGGGGAAGCCCAAGCC
CAAGGTACCAGAAAGGAAGTCCTCTCTGATATCTTCAGTATCCATTTCCTCATCGTCCACTTCTCTTTCT
TCTAGTACTTCTACTGAAGGAAGTGGCACTATGAAGAAGCTGGATCCAGCCGTGGGCTCTCCCCCGGCTC
CTCCTCCTCCTCCTGTTCCCTCTCCTCCATTCCCTTGTCCTGCAGACAGGTCTCCTTTCCTTCCTCCCCC
ACCTCCTGTCACAGATTGCTCCCAGGGCTCTCCTCTGCCTCACTCTCCTGTGTTCCCCCCTCCGCCGCCA
GAAGCTCTCATTCCTTTCTGCTCCCCACCTGATTGGTGCCTTTCTCCTCCCCGCCCTGCACTGAGCCCCA
TTCTTCCAGATTCACCTGTGTCCTTGCCATTGCCCCCACCTCTCTTACCTTCCTCGGAACCCCCACCTGC
CCCACCTCTTGACCCCAAATTCATGAAAGACACCAGGCCGCCTTTCACAAATTCTGGCCAGCCAGAATCC
TCCCGGGGATCCTTGAGGCCGCCTTCTACCAAGGAGGAGACCAGCAGGCCCCCCATGCCCCTGATAACCA
CGGAAGCATTGCAGATGGTGCAGTTGAGGCCCGTGAGAAAGAACTCAGGCGCTGAGGCGGCACAGTTGTC
TGAACGAACAGCTCAGGAACAACGAACTCCAGTTGCTCCACAGTACCACTTAAAGCCATCTGCTTTCCTG
AAATCCCGAAATAGCACAAATGAAATGGAGAGTGAAAGCCAGCCTGCCTCTGTGACAAGCTCGCTTCCGA
CGCCTGCCAAGAGCTCGAGTCAGGGTGACCATGGCAGTGCGGCTGAGCGTGGTGGCCCTGTGAGCCGCAG
CCCTGGAGCTCCAAGCGCTGGGGAGGCAGAGGCTCGGCCCAGCCCCAGCACCACCCCACTCCCAGACTCT
TCACCCAGCAGGAAGCCACCCCCCATTTCCAAGAAGCCCAAACTGTTCCTGGTGGTACCACCTCCGCAGA
AAGATTTTGCAGTGGAGCCCGCAGAGAACGTGAGCGAAGCCCTCCGAGCTGTGCCCAGCCCCACGACGGG
AGAGGAGGGCTCTGTGCACAGCAGGGAGGCAAAAGAGAGTTCTGCAGCCCAAGCTGGCTCTCATGCCACG
CACCCTGGCACCTCGGTTCTTGAGGGAGGAGCTGCAGGATCCATGTCTCCCAGCAGAGTGGAAGCCAATG
TCCCCATGGTTCAGCCTGATGTCTCACCAGCCCCCAAGCAGGAGGAGCCAGCCGAGAACAGTGCGGATAC
TGGGGGCGATGGGGAGAGCTGCCTATCTCAACAGGACGGAGCAGCTGGGGTGCCGGAGACCAACGCAGCC
GGTTCATCCTCAGAGGCCTGTGACTTCCTCAAGGAAGACGGGAATGATGAGGTAATGACCCCCAGTCGAC
CCAGGACCACAGAAGACCTTTTTGCAGCTATTCACAGATCCAAAAGGAAAGTCCTCGGCCGTAGAGATTC
AGATGATGACCACTCCCGAAACCATTCTCCCTCCCCGCCCGTGACACCCACCGGCGCTGCCCCAAGCCTG
GCCTCTCCAAAGCAAGTGGGGTCGATTCAGAGAAGCATCCGAAAGAGCAGCACCAGCAGTGACAACTTCA
AAGCTCTGCTGCTGAAAAAGGGCAGTCGTTCAGACACCAGCGCCCGCATGTCTGCAGCAGAGATGCTCAA
GAACACAGACCCTAGATTCCAGAGGTCGAGGTCAGAGCCTTCCCCAGATGCCCCCGAGAGCCCGTCAAGC
TGCTCCCCAAGCAAGAACAGAAGGGCGCAGGAGGAGTGGGCCAAGAACGAAGGCTTGATGCCTCGGAGTC
TGTCCTTTTCCGGCCCCAGGTACGGCCGCAGCCGAACGCCGCCTTCTGCCGCCAGCAGCAGGTACAGCAT
GCGGAACCGGATCCAGAGCAGCCCCATGACCGTCATCTCGGAGGGAGAAGGGGAAGCCGTGGAGCCTGTG
GACAGCATAGCCCGCGGGGCTCTGGGCGCTGCGGAGGGATGTTCCCTGGACGGACTGGCGAGGGAGGAGA
TGGACGAGGGCGGCCTGCTCTGTGGGGAGGGGCCTGCCGCCTCCCTGCAGCCCCAGGCCCCCGGCCCTGT
GGATGGGACAGCCAGTGCAGAGGGCAGAGAGCCCTCCCCACAGTGTGGCGGTTCTCTGAGCGAGGAGAGT
TAG

Translation (1610 aa):
MKKEGSSGSFRLQPNTGSLSRAVSWINFSSLSRQTKRLFRSDGELSVCGQQVEVDDENWIYRAQPRKAVS
NLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRHDGYRSSQYYSQGPTF
AANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQ
QAQTVQADVVPINITASGTGQDDADGHSVYTPDHYSTLGRFNSCRSAGQRSETRDSSCQTEDVKVVPPSM
RRIRAQKGQGIAAQMGHFSGSSGNMSVLSDSAGIVFPSRLDSDAGFHSLPRSGARANIQSLEPRLGALGP
AGDMNGTFLYQRGHPQADENLGHLGGASGTGTLLRPKSQELRHFESENIMSPACVVSPHATYSTSIIPNA
TLSSSSEVIAIPTAQSAGQRESKSSGSSHARIKSRDHLISRHAVKGDPQSPGRHWNEGHATILSQDLDPH
SPGEPALLSLCDSAVPLNAPANRENGSQAMPYNCRNNLAFPAHPQDVDGKSESSYSGGGGHSSSEPWEYK
SSGNGRASPLKPHLATPGYSTPTSNMSSCSLDQTSNKEDAGSLYSEDHDGYCASVHTDSGHGSGNLCNSS
DGFGNPRHSVINVFVGRAQKNQGDRSNYQDKSLSRNISLKKAKKPPLPPSRTDSLRRIPKKSSQCNGQVL
NESLIATLQHSLQLSLPGKSGSSPSQSPCSDLEEPWLPRSRSQSTVSAGSSMTSATTPNVYSLCGATPSQ
SDTSSVKSEYTDPWGYYIDYTGMQEDPGNPAGGCSTSSGVPTGNGPVRHVQEGSRATMPQVPGGSVKPKI
MSPEKSHRVISPSSGYSSQSNTPTALTPVPVFLKSVSPANGKGKPKPKVPERKSSLISSVSISSSSTSLS
SSTSTEGSGTMKKLDPAVGSPPAPPPPPVPSPPFPCPADRSPFLPPPPPVTDCSQGSPLPHSPVFPPPPP
EALIPFCSPPDWCLSPPRPALSPILPDSPVSLPLPPPLLPSSEPPPAPPLDPKFMKDTRPPFTNSGQPES
SRGSLRPPSTKEETSRPPMPLITTEALQMVQLRPVRKNSGAEAAQLSERTAQEQRTPVAPQYHLKPSAFL
KSRNSTNEMESESQPASVTSSLPTPAKSSSQGDHGSAAERGGPVSRSPGAPSAGEAEARPSPSTTPLPDS
SPSRKPPPISKKPKLFLVVPPPQKDFAVEPAENVSEALRAVPSPTTGEEGSVHSREAKESSAAQAGSHAT
HPGTSVLEGGAAGSMSPSRVEANVPMVQPDVSPAPKQEEPAENSADTGGDGESCLSQQDGAAGVPETNAA
GSSSEACDFLKEDGNDEVMTPSRPRTTEDLFAAIHRSKRKVLGRRDSDDDHSRNHSPSPPVTPTGAAPSL
ASPKQVGSIQRSIRKSSTSSDNFKALLLKKGSRSDTSARMSAAEMLKNTDPRFQRSRSEPSPDAPESPSS
CSPSKNRRAQEEWAKNEGLMPRSLSFSGPRYGRSRTPPSAASSRYSMRNRIQSSPMTVISEGEGEAVEPV
DSIARGALGAAEGCSLDGLAREEMDEGGLLCGEGPAASLQPQAPGPVDGTASAEGREPSPQCGGSLSEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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