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Report for CCDS55209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55209.1 Public Homo sapiens 8 SFTPC 24 110 108 CCDS HistoryNCBI Gene:6440Re-query CCDS DB by CCDS ID:55209.1Re-query CCDS DB by GeneID:6440See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 55209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521315.5 ENSP00000430410.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521315.5Link to Ensembl Protein Viewer:ENSP00000430410.1Re-query CCDS DB by Nucleotide ID:ENST00000521315Re-query CCDS DB by Protein ID:ENSP00000430410
Original member Current member EBI ENST00000679463.1 ENSP00000505152.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000679463.1Link to Ensembl Protein Viewer:ENSP00000505152.1Re-query CCDS DB by Nucleotide ID:ENST00000679463Re-query CCDS DB by Protein ID:ENSP00000505152
Original member Current member NCBI NM_001172357.2 NP_001165828.1 Accepted alive Link to Nucleotide Sequence:NM_001172357.2Link to Protein Sequence:NP_001165828.1Re-query CCDS DB by Nucleotide ID:NM_001172357Re-query CCDS DB by Protein ID:NP_001165828Link to BLAST:NP_001165828.1
Original member Current member NCBI NM_001317778.2 NP_001304707.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317778.2Link to Protein Sequence:NP_001304707.1Re-query CCDS DB by Nucleotide ID:NM_001317778Re-query CCDS DB by Protein ID:NP_001304707Link to BLAST:NP_001304707.1
Original member Current member NCBI NM_001317780.2 NP_001304709.1 Accepted alive Link to Nucleotide Sequence:NM_001317780.2Link to Protein Sequence:NP_001304709.1Re-query CCDS DB by Nucleotide ID:NM_001317780Re-query CCDS DB by Protein ID:NP_001304709Link to BLAST:NP_001304709.1
Original member Current member NCBI NM_001385656.1 NP_001372585.1 Accepted alive Link to Nucleotide Sequence:NM_001385656.1Link to Protein Sequence:NP_001372585.1Re-query CCDS DB by Nucleotide ID:NM_001385656Re-query CCDS DB by Protein ID:NP_001372585Link to BLAST:NP_001372585.1
Original member Current member NCBI NM_001385657.1 NP_001372586.1 Accepted alive Link to Nucleotide Sequence:NM_001385657.1Link to Protein Sequence:NP_001372586.1Re-query CCDS DB by Nucleotide ID:NM_001385657Re-query CCDS DB by Protein ID:NP_001372586Link to BLAST:NP_001372586.1
Original member Current member NCBI NM_001385658.1 NP_001372587.1 Accepted alive Link to Nucleotide Sequence:NM_001385658.1Link to Protein Sequence:NP_001372587.1Re-query CCDS DB by Nucleotide ID:NM_001385658Re-query CCDS DB by Protein ID:NP_001372587Link to BLAST:NP_001372587.1
Original member Current member NCBI NM_001385659.1 NP_001372588.1 Accepted alive Link to Nucleotide Sequence:NM_001385659.1Link to Protein Sequence:NP_001372588.1Re-query CCDS DB by Nucleotide ID:NM_001385659Re-query CCDS DB by Protein ID:NP_001372588Link to BLAST:NP_001372588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165828.1 191 P11686-2 191 100% 0 0
NP_001304707.1 191 P11686-2 191 100% 0 0
NP_001304709.1 191 P11686-2 191 100% 0 0
NP_001372585.1 191 P11686-2 191 100% 0 0
NP_001372586.1 191 P11686-2 191 100% 0 0
NP_001372587.1 191 P11686-2 191 100% 0 0
NP_001372588.1 191 P11686-2 191 100% 0 0

Chromosomal Locations for CCDS 55209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22161829 22161870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22162574 22162732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163080 22163202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163436 22163546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163901 22164041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGAT
TTGGCATTCCCTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGT
CGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAG
ATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCT
TCTCCATCGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCC
TGGCACCTGCTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAA
GTCCACAACTTCCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAG
GCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTGGCGAGGTGCC
GCTCTACTACATCTAG

Translation (191 aa):
MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLIVVVIVGALLMGLHMSQKHTEMVLE
MSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTCCYIMKIAPESIPSLEALTRK
VHNFQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVPLYYI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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