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Report for CCDS55298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55298.1 Public Homo sapiens 9 ELAVL2 24 110 108 CCDS HistoryNCBI Gene:1993Re-query CCDS DB by CCDS ID:55298.1Re-query CCDS DB by GeneID:1993See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223951.10 ENSP00000223951.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000223951.10Link to Ensembl Protein Viewer:ENSP00000223951.5Re-query CCDS DB by Nucleotide ID:ENST00000223951Re-query CCDS DB by Protein ID:ENSP00000223951
Original member Current member NCBI NM_001171195.2 NP_001164666.1 Accepted alive Link to Nucleotide Sequence:NM_001171195.2Link to Protein Sequence:NP_001164666.1Re-query CCDS DB by Nucleotide ID:NM_001171195Re-query CCDS DB by Protein ID:NP_001164666Link to BLAST:NP_001164666.1
Original member Current member NCBI NM_001171197.2 NP_001164668.1 Accepted alive Link to Nucleotide Sequence:NM_001171197.2Link to Protein Sequence:NP_001164668.1Re-query CCDS DB by Nucleotide ID:NM_001171197Re-query CCDS DB by Protein ID:NP_001164668Link to BLAST:NP_001164668.1
Original member Current member NCBI NM_001351477.2 NP_001338406.1 Accepted alive Link to Nucleotide Sequence:NM_001351477.2Link to Protein Sequence:NP_001338406.1Re-query CCDS DB by Nucleotide ID:NM_001351477Re-query CCDS DB by Protein ID:NP_001338406Link to BLAST:NP_001338406.1
Original member Current member NCBI NM_001351478.2 NP_001338407.1 Accepted alive Link to Nucleotide Sequence:NM_001351478.2Link to Protein Sequence:NP_001338407.1Re-query CCDS DB by Nucleotide ID:NM_001351478Re-query CCDS DB by Protein ID:NP_001338407Link to BLAST:NP_001338407.1
Original member Current member NCBI NM_001385693.1 NP_001372622.1 Accepted alive Link to Nucleotide Sequence:NM_001385693.1Link to Protein Sequence:NP_001372622.1Re-query CCDS DB by Nucleotide ID:NM_001385693Re-query CCDS DB by Protein ID:NP_001372622Link to BLAST:NP_001372622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164666.1 346 Q12926-2 346 100% 0 0
NP_001164668.1 346 Q12926-2 346 100% 0 0
NP_001338406.1 346 Q12926-2 346 100% 0 0
NP_001338407.1 346 Q12926-2 346 100% 0 0
NP_001372622.1 346 Q12926-2 346 100% 0 0

Chromosomal Locations for CCDS 55298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 23692557 23692884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23701379 23701604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23704918 23705071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23731022 23731125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 23762006 23762234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACCATAAACAACA
ACTGTTCGTCACCAGTTGACTCTGGGAACACAGAAGACAGCAAGACCAACTTAATAGTCAACTACCTTCC
TCAGAACATGACACAGGAGGAACTAAAGAGTCTCTTTGGGAGCATTGGTGAAATAGAGTCCTGTAAGCTT
GTAAGAGACAAAATAACAGGGCAGAGCTTGGGATATGGCTTTGTGAACTACATTGACCCCAAGGATGCAG
AGAAAGCTATCAACACCCTGAATGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGCCC
AAGTTCAGCTTCTATCAGAGATGCAAATTTATATGTCAGCGGACTTCCAAAAACAATGACCCAGAAGGAG
TTGGAACAGCTTTTTTCACAATATGGACGCATTATTACTTCTCGTATTCTTGTCGACCAGGTCACTGGCA
TATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGAATTGAGGCAGAAGAAGCTATCAAAGGCCTAAA
TGGCCAGAAACCTCCCGGTGCCACGGAGCCAATCACTGTAAAGTTTGCTAATAACCCAAGCCAAAAAACC
AATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTATCCAGGACCGCTAGCTCAGCAGG
CACAGCGTTTTAGGTTTTCTCCAATGACCATTGACGGAATGACCAGTTTGGCTGGAATTAATATCCCTGG
GCACCCTGGAACAGGGTGGTGTATATTTGTGTACAACCTGGCTCCTGACGCAGATGAGAGTATCCTGTGG
CAAATGTTTGGGCCTTTTGGAGCTGTCACCAATGTGAAGGTCATCCGTGACTTTAACACCAATAAATGCA
AAGGTTTTGGATTTGTGACTATGACAAACTATGATGAGGCTGCCATGGCGATAGCTAGCCTCAATGGATA
CCGTCTGGGAGACAGAGTACTGCAGGTCTCCTTTAAGACAAACAAAACGCACAAAGCCTAA

Translation (346 aa):
METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL
VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE
LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT
NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILW
QMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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