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Report for CCDS5537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5537.1 Public Homo sapiens 7 SBDS 24 110 108 CCDS HistoryNCBI Gene:51119Re-query CCDS DB by CCDS ID:5537.1Re-query CCDS DB by GeneID:51119See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246868.7 ENSP00000246868.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246868.7Link to Ensembl Protein Viewer:ENSP00000246868.2Re-query CCDS DB by Nucleotide ID:ENST00000246868Re-query CCDS DB by Protein ID:ENSP00000246868
Original member Current member EBI ENST00000697897.1 ENSP00000513469.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697897.1Link to Ensembl Protein Viewer:ENSP00000513469.1Re-query CCDS DB by Nucleotide ID:ENST00000697897Re-query CCDS DB by Protein ID:ENSP00000513469
Original member Current member NCBI NM_016038.4 NP_057122.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016038.4Link to Protein Sequence:NP_057122.2Re-query CCDS DB by Nucleotide ID:NM_016038Re-query CCDS DB by Protein ID:NP_057122Link to BLAST:NP_057122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057122.2 250 Q9Y3A5 250 100% 0 0

Chromosomal Locations for CCDS 5537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66988371 66988499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66991137 66991301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66993217 66993417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66994212 66994341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66995290 66995417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCGATCTTCACCCCCACCAACCAGATCCGCCTAACCAATGTGGCCGTGGTACGGATGAAGCGTGCCG
GGAAGCGCTTCGAAATCGCCTGCTACAAAAACAAGGTCGTCGGCTGGCGGAGCGGCGTGGAAAAAGACCT
CGATGAAGTTCTGCAGACCCACTCAGTGTTTGTAAATGTTTCTAAAGGTCAGGTTGCCAAAAAGGAAGAT
CTCATCAGTGCGTTTGGAACAGATGACCAAACTGAAATCTGTAAGCAGATTTTGACTAAAGGAGAAGTTC
AAGTATCAGATAAAGAAAGACACACACAACTGGAGCAGATGTTTAGGGACATTGCAACTATTGTGGCAGA
CAAATGTGTGAATCCTGAAACAAAGAGACCATACACCGTGATCCTTATTGAGAGAGCCATGAAGGACATC
CACTATTCGGTGAAAACCAACAAGAGTACAAAACAGCAGGCTTTGGAAGTGATAAAGCAGTTAAAAGAGA
AAATGAAGATAGAACGTGCTCACATGAGGCTTCGGTTCATCCTTCCAGTCAATGAAGGCAAGAAGCTGAA
AGAAAAGCTCAAGCCACTGATCAAGGTCATAGAAAGTGAAGATTATGGCCAACAGTTAGAAATCGTATGT
CTGATTGACCCGGGCTGCTTCCGAGAAATTGATGAGCTAATAAAAAAGGAAACTAAAGGCAAAGGTTCTT
TGGAAGTACTCAATCTGAAAGATGTAGAAGAAGGAGATGAGAAATTTGAATGA

Translation (250 aa):
MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKED
LISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDI
HYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQLEIVC
LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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