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Report for CCDS55438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55438.1 Public Homo sapiens X GDPD2 24 110 108 CCDS HistoryNCBI Gene:54857Re-query CCDS DB by CCDS ID:55438.1Re-query CCDS DB by GeneID:54857See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538649.5 ENSP00000444601.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538649.5Link to Ensembl Protein Viewer:ENSP00000444601.1Re-query CCDS DB by Nucleotide ID:ENST00000538649Re-query CCDS DB by Protein ID:ENSP00000444601
Original member Current member EBI ENST00000536730.5 ENSP00000445982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536730.5Link to Ensembl Protein Viewer:ENSP00000445982.1Re-query CCDS DB by Nucleotide ID:ENST00000536730Re-query CCDS DB by Protein ID:ENSP00000445982
Original member Current member NCBI NM_001171191.2 NP_001164662.1 Accepted alive Link to Nucleotide Sequence:NM_001171191.2Link to Protein Sequence:NP_001164662.1Re-query CCDS DB by Nucleotide ID:NM_001171191Re-query CCDS DB by Protein ID:NP_001164662Link to BLAST:NP_001164662.1
Original member Current member NCBI NM_001171193.2 NP_001164664.1 Accepted alive Link to Nucleotide Sequence:NM_001171193.2Link to Protein Sequence:NP_001164664.1Re-query CCDS DB by Nucleotide ID:NM_001171193Re-query CCDS DB by Protein ID:NP_001164664Link to BLAST:NP_001164664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164662.1 460 Q9HCC8-2 460 100% 0 0
NP_001164664.1 460 Q9HCC8-2 460 100% 0 0

Chromosomal Locations for CCDS 55438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 70425791 70425856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70426052 70426111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70426371 70426469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70426648 70426741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70426866 70427011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70427137 70427219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70427313 70427463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70429493 70429714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70429915 70430063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70432307 70432454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70432579 70432661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70432912 70432940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70433034 70433086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGACTGGTCCCTGGCATTCCTGCTGGTCATCTCTCTACTGGTCACATATGCATCCTTGCTATTGGTCC
TGGCCCTGCTCCTGCGGCTTTGTAGACAGCCCCTGCATCTGCACAGCCTCCACAAGGTGCTGCTGCTCCT
CATTATGCTGCTTGTGGCGGCTGGCCTTGTGGGACTGGACATCCAATGGCAGCAGGAGTGGCATAGCTTG
CGTGTGTCACTGCAGGCCACAGCCCCATTCCTTCATATTGGAGCAGCCGCTGGAATTGCCCTCCTGGCCT
GGCCTGTGGCTGATACCTTCTACCGTATCCACCGAAGAGGTCCCAAGATTCTGCTACTGCTCCTATTTTT
TGGAGTTGTCCTGGTCATCTACTTGGCCCCCCTATGCATCTCCTCACCCTGCATCATGGAACCCAGAGAC
TTACCACCCAAGCCTGGGCTGGTGGGACACCGAGGGGCCCCCATGCTGGCTCCCGAGAACACCCTGATGT
CCTTGCGGAAGACAGCTGAATGCGGAGCTACTGTGTTTGAGACTGATGTGATGGTCAGCTCCGATGGGGT
CCCCTTCCTCATGCATGATGAGCACCTCAGCAGGACCACGAATGTAGCCTCTGTATTCCCAACCCGAATC
ACAGCCCACAGCAGTGACTTCTCCTGGACTGAACTGAAGAGACTCAATGCTGGATCCTGGTTCCTAGAGA
GGCGACCCTTCTGGGGGGCCAAACCGCTGGCAGGCCCTGATCAGAAAGAGGCTGAGAGTCAGACGGTACC
AGCATTAGAAGAGCTATTGGAGGAAGCTGCAGCCCTCAACCTTTCCATCATGTTCGACTTGCGCCGACCC
CCACAGAACCACACATACTATGACACTTTTGTGATCCAGACATTGGAGACTGTGCTGAATGCAAGGGTGC
CCCAAGCCATGGTCTTTTGGCTACCAGATGAAGATCGGGCTAATGTCCAACGACGGGCACCTGGAATGCG
CCAGATATATGGACGTCAGGGAGGCAACAGAACGGAGAGGCCCCAGTTTCTTAACCTCCCCTATCAAGAT
CTGCCACTATTGGATATCAAGGCATTGCATAAGGATAATGTCTCGGTGAACCTATTTGTAGTGAACAAGC
CCTGGCTCTTCTCTCTGCTTTGGTGTGCAGGGGTGGATTCGGTCACCACCAACGACTGCCAGCTGCTGCA
GCAGATGCGTTACCCTATCTGGCTTATTACCCCTCAAACCTACCTAATCATATGGGTCATTACCAATTGT
GTTTCCACCATGCTGCTTTTGTGGACCTTCCTCCTCCAAAGAAGATTTGTTAAGAAGAGAGGGAAAACTG
GCTTAGAAACAGCAGTGCTGCTGACAAGGATCAACAATTTCATGATGGAGTGA

Translation (460 aa):
MDWSLAFLLVISLLVTYASLLLVLALLLRLCRQPLHLHSLHKVLLLLIMLLVAAGLVGLDIQWQQEWHSL
RVSLQATAPFLHIGAAAGIALLAWPVADTFYRIHRRGPKILLLLLFFGVVLVIYLAPLCISSPCIMEPRD
LPPKPGLVGHRGAPMLAPENTLMSLRKTAECGATVFETDVMVSSDGVPFLMHDEHLSRTTNVASVFPTRI
TAHSSDFSWTELKRLNAGSWFLERRPFWGAKPLAGPDQKEAESQTVPALEELLEEAAALNLSIMFDLRRP
PQNHTYYDTFVIQTLETVLNARVPQAMVFWLPDEDRANVQRRAPGMRQIYGRQGGNRTERPQFLNLPYQD
LPLLDIKALHKDNVSVNLFVVNKPWLFSLLWCAGVDSVTTNDCQLLQQMRYPIWLITPQTYLIIWVITNC
VSTMLLLWTFLLQRRFVKKRGKTGLETAVLLTRINNFMME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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