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Report for CCDS55441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55441.1 Public Homo sapiens X NLGN3 24 110 108 CCDS HistoryNCBI Gene:54413Re-query CCDS DB by CCDS ID:55441.1Re-query CCDS DB by GeneID:54413See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358741.4 ENSP00000351591.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358741.4Link to Ensembl Protein Viewer:ENSP00000351591.4Re-query CCDS DB by Nucleotide ID:ENST00000358741Re-query CCDS DB by Protein ID:ENSP00000351591
Original member Current member NCBI NM_181303.2 NP_851820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181303.2Link to Protein Sequence:NP_851820.1Re-query CCDS DB by Nucleotide ID:NM_181303Re-query CCDS DB by Protein ID:NP_851820Link to BLAST:NP_851820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851820.1 848 Q9NZ94-1 848 100% 0 0

Chromosomal Locations for CCDS 55441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71147750 71148206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71148846 71148905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71153477 71153536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71155214 71155363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71164143 71164328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71167011 71167800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71169254 71170097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGTGGCTGCGGCTTGGCCCGCCCTCGCTGTCCCTGAGCCCCAAGCCCACGGTTGGCAGGAGCCTGTGCC
TCACCCTGTGGTTCCTCAGTTTGGCGCTGAGGGCCAGTACCCAGGCCCCAGCACCCACAGTCAACACTCA
CTTTGGGAAGCTAAGGGGTGCCCGAGTACCACTGCCCAGTGAGATCCTGGGGCCTGTGGACCAATACCTG
GGGGTGCCCTACGCAGCTCCCCCGATCGGCGAGAAACGTTTCCTGCCCCCTGAACCACCCCCATCCTGGT
CGGGCATCCGGAACGCCACACACTTTCCCCCAGTGTGCCCCCAGAACATCCACACAGCTGTGCCCGAAGT
CATGCTGCCGGTCTGGTTCACTGCCAACTTGGATATCGTCGCTACTTACATCCAGGAGCCCAACGAAGAC
TGTCTCTACCTGAACGTCTATGTGCCGACGGAGGATGTAAAGCGGATTTCCAAGGAATGCGCCCGAAAGC
CCAACAAGAAAATTTGTAGGAAAGGAGGATCCGGCGCTAAGAAACAGGGCGAGGACTTAGCGGATAATGA
CGGGGATGAAGATGAAGACATCCGGGACAGTGGTGCTAAACCCGTCATGGTCTACATCCACGGAGGCTCT
TACATGGAAGGGACAGGCAACATGATTGATGGCAGCATCCTCGCCAGTTATGGCAATGTCATCGTCATCA
CCCTCAACTATCGGGTTGGAGTGCTAGGTTTCCTGAGTACTGGAGATCAGGCTGCCAAGGGCAACTATGG
GCTCCTTGACCAGATCCAGGCCCTCCGCTGGGTGAGCGAGAATATTGCCTTCTTCGGGGGAGACCCCCGC
CGGATCACTGTCTTTGGCTCGGGCATTGGTGCATCCTGCGTCAGCCTCCTCACGTTGTCACATCACTCAG
AGGGACTTTTCCAGAGAGCCATCATCCAAAGTGGCTCTGCTCTGTCCAGCTGGGCTGTGAACTACCAACC
AGTGAAGTACACCAGCCTGCTGGCAGACAAAGTGGGCTGTAATGTGCTGGACACCGTGGATATGGTGGAC
TGTCTTCGGCAAAAGAGTGCCAAGGAGCTGGTAGAGCAGGACATCCAGCCAGCCCGCTACCACGTGGCCT
TTGGCCCTGTGATTGATGGTGATGTCATTCCTGATGACCCTGAGATCCTCATGGAGCAGGGCGAGTTCCT
CAACTATGACATCATGCTAGGTGTCAACCAGGGCGAGGGTCTCAAGTTTGTGGAAGGGGTGGTGGACCCT
GAGGATGGTGTCTCTGGCACTGACTTTGACTATTCCGTCTCCAATTTTGTGGACAATCTGTATGGCTATC
CTGAGGGTAAGGACACCCTGCGAGAGACCATCAAGTTCATGTATACAGACTGGGCAGACCGTGACAACCC
TGAGACCCGCCGTAAAACACTGGTGGCACTCTTCACTGACCACCAGTGGGTGGAGCCCTCAGTGGTGACA
GCCGATCTGCATGCCCGCTACGGCTCGCCTACCTACTTCTACGCCTTCTATCATCACTGCCAGAGCCTCA
TGAAGCCTGCTTGGTCAGATGCAGCTCATGGGGATGAAGTACCCTATGTTTTTGGGGTTCCTATGGTAGG
CCCCACTGACCTTTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCTCAGTGCTGTCGTCATGACCTAT
TGGACCAACTTTGCCAAGACTGGGGATCCCAACAAGCCGGTCCCCCAGGACACCAAGTTCATTCACACCA
AGGCCAACCGCTTTGAGGAAGTGGCCTGGTCCAAATACAATCCCCGAGACCAGCTCTACCTTCACATCGG
GCTGAAACCAAGGGTCCGAGATCATTACCGGGCCACTAAGGTGGCCTTTTGGAAACATCTGGTGCCCCAC
CTATACAACCTGCATGACATGTTCCACTATACGTCCACCACCACCAAAGTGCCGCCTCCGGATACCACCC
ACAGCTCCCACATCACCCGCAGGCCCAATGGCAAGACCTGGAGCACCAAGCGGCCAGCCATCTCACCTGC
CTACAGCAACGAGAATGCCCAGGGGTCCTGGAACGGGGACCAGGATGCAGGGCCACTCCTGGTGGAGAAC
CCTCGTGACTACTCCACTGAATTAAGTGTCACCATCGCCGTGGGGGCCTCCCTCCTGTTCCTTAACGTTC
TGGCCTTCGCTGCCCTCTACTACCGTAAGGACAAACGGCGCCAGGAGCCCCTGCGGCAGCCTAGCCCTCA
GCGGGGAGCCGGGGCCCCGGAGTTGGGAGCTGCTCCAGAGGAGGAGCTGGCAGCATTACAACTGGGCCCC
ACCCACCACGAGTGTGAGGCCGGTCCCCCCCATGACACGCTGCGCCTCACTGCATTGCCCGACTACACCC
TGACCCTGCGGCGCTCCCCGGATGACATCCCACTCATGACCCCCAACACCATCACTATGATCCCCAACTC
CCTGGTAGGGCTGCAGACATTGCACCCCTATAACACCTTTGCCGCAGGGTTCAACAGTACCGGGCTGCCC
CACTCACACTCCACTACCCGGGTATAG

Translation (848 aa):
MWLRLGPPSLSLSPKPTVGRSLCLTLWFLSLALRASTQAPAPTVNTHFGKLRGARVPLPSEILGPVDQYL
GVPYAAPPIGEKRFLPPEPPPSWSGIRNATHFPPVCPQNIHTAVPEVMLPVWFTANLDIVATYIQEPNED
CLYLNVYVPTEDVKRISKECARKPNKKICRKGGSGAKKQGEDLADNDGDEDEDIRDSGAKPVMVYIHGGS
YMEGTGNMIDGSILASYGNVIVITLNYRVGVLGFLSTGDQAAKGNYGLLDQIQALRWVSENIAFFGGDPR
RITVFGSGIGASCVSLLTLSHHSEGLFQRAIIQSGSALSSWAVNYQPVKYTSLLADKVGCNVLDTVDMVD
CLRQKSAKELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGEFLNYDIMLGVNQGEGLKFVEGVVDP
EDGVSGTDFDYSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVT
ADLHARYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGVPMVGPTDLFPCNFSKNDVMLSAVVMTY
WTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSKYNPRDQLYLHIGLKPRVRDHYRATKVAFWKHLVPH
LYNLHDMFHYTSTTTKVPPPDTTHSSHITRRPNGKTWSTKRPAISPAYSNENAQGSWNGDQDAGPLLVEN
PRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRRQEPLRQPSPQRGAGAPELGAAPEEELAALQLGP
THHECEAGPPHDTLRLTALPDYTLTLRRSPDDIPLMTPNTITMIPNSLVGLQTLHPYNTFAAGFNSTGLP
HSHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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