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Report for CCDS55565.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55565.2 Public Homo sapiens 1 TTC34 24 110 108 CCDS HistoryNCBI Gene:100287898Re-query CCDS DB by CCDS ID:55565.2Re-query CCDS DB by GeneID:100287898See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 55565.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 55565.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401095.9 ENSP00000383873.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401095.9Link to Ensembl Protein Viewer:ENSP00000383873.4Re-query CCDS DB by Nucleotide ID:ENST00000401095Re-query CCDS DB by Protein ID:ENSP00000383873
Original member Current member NCBI NM_001242672.3 NP_001229601.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242672.3Link to Protein Sequence:NP_001229601.2Re-query CCDS DB by Nucleotide ID:NM_001242672Re-query CCDS DB by Protein ID:NP_001229601Link to BLAST:NP_001229601.2

Chromosomal Locations for CCDS 55565.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2641368 2641895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2644264 2644478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2645293 2645563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2783609 2783775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2785819 2786023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2787481 2787706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2789503 2790346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2800044 2800827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGATGTCAGCCCAGGAGCTCGTGGCCTGCCTCTGCCGGGAGGGGGAGCAGCATCTGGCGCTGGGGGAGC
TGCCCCTGGCCACCGCCTTCTACCTGGCTGCATTCAGCTGCCACGCCCCCTCAGCCCTGCAGAGTGTGCG
CACTGCCCTGGCCCAGGCTCGGGGGGCGGCGGTGGTGGCCACCCTGGAGTCCTGGTGCCGCGGGGACAGC
CAGATCCCCGCCATCCACTGGGACGGCATGGCAGTGGTCTCCCTGACAGGGTCGCTGGCCTCTGCCTTCC
TCGGCGCCCTCTGCCCGGACCACCCCGCCGCCATCCTGCACCTGCTGGCAGGTCTGCTGGCCCGCGGGCG
TCACGAAGAAGTGGTGCAACGCTGCAGCGCCCTGCTGGACTCTCATGCACAGCAAGTCCTGGAGCTGCGG
CTGACCCGCGCCCTCGCCTGGGTCCTGTCCGGGGTGCAGGCAGCGGATGGTGTGGCCGCCTATCTCCAGG
CCTTCGCCTCCAGCGCCGACCGGACGGTAGCTTTCATTCGCACCCACCAGCGGCCCCACCTCCCCGCGCT
GCTCAGTGCCCTCCAGGACTACCTCTCGGGGCACCCGGAGGCTGGGCACAGTGCCGGCCAGCAGGAGACC
GGTGGCCAGCGACTCCTGGCGGCTCTGGACCCCAGGGGCACCCGGAGTGACACCCTGTCACCTGAAGCTC
TGCTCCACAGCGGCAGGTTTGAGGACTGCCTGGCAGCATGCAGCCGGGCCCTCGAGGCCCATCCCACCGG
CAGCGAACCCCAAGGTGAGCGCCGAGCCGCCCTGCTGGTCACCCGCGCGGCCTCGGCCTTCTTCCTGGAC
GGCCGGGCCCAGGACGTGTTTTGGAACCTGCAGGAGGCCTTCCGCGAGAGCCCCTCTGGGGCGCGGAGGC
AGTTCCAGGCCGTGTTCTCTGTCCAGGACCAGGAGCGCGTCCGGGCTCAGGCGCAGGAGGCCGCGGACGT
GGGCTTCGCCCGCTTCCAGGAAGCCGTGCGGAACCACCCTGAGCTCCGCGAGGATGCGGGCCGCGAGCTG
CTGGCCCCGGTAACCCGCGCGCTCCGCGTCCTGCTTCGCCTGGCGCCTGCCGGGGCGCGACCCGCGCTGG
GAGCCCGCCTCGCCGAGTGCCTGCTGCTGGCAGGGGACGCGGCGGGCGCCCGGGCCATGTGCGAGCGCCT
GCTGCGGCCCGCACGCCCTGAGGACCCTGCGGGGGACCGTGCAGGGGACCGCGCACCTCTCCTGGCTCTG
CGCGGCTTCTGCGCGCTGCACGCCGGGGACTCGCGGCGCGCCATGGAGGACTTCCAGACGGTAGTGGAGC
AGGGGGCGCCGCACCCGGGGGGCTGTGTGCGCGCGCTGTGCGGCCGGGGACTGCTGCGGGTGCTGGCGGG
CAGCGCGTTCCTGGGCACGCTGGACTATGTCACCGCCTGCAGGCTGCGGCCCGAGGAGGCGCTGCTGGCC
GCCAAGGCCTACGTGCCCTGGAACCAGCGGGGGCTGCTGCTGGTGGTGCTGCGGGAGGAGGCCCGTGGGA
TGCTGCAGCGATCTCCACGCGCCGGGCCGTCCAGAGCGCAGGGCCGGAGGGAGGCCGCAGAGACGGGCGG
CCCCACCACGCAGGAGGGGGTCGCCTGCGGCGTGCACCAGCTGGCCACACTGCTGATGGAGCTGGATTCA
GAGGACGAGGCCTCTCGCCTCCTGGCGGCTGATGCCCTGTACCGCCTGGGCCGCCTGGAGGAGACCCACA
AGGCCCTGCTGGTGGCCCTATCCCGGAGGCCCCAGGCAGCCCCTGTGCTGGCACGACTGGCCCTGCTGCA
GCTGAGGAGGGGCTTCTTCTATGACGCCAACCAGTTGGTGAAGAAGCTGGTCCAGTCTGGTGACACCGCC
TGCCTCCAGCCCACCCTGGACGTCTTCTGCCACGAGGACCGGCAGCTGCTTCAAGGCCACTGCCACGCCA
GGGCCCTGGCCATCCTGCGGGCACGGCCAGGCGGGGCCGACGGCAGGGTTCACACCAAGGAGGCCATCGC
CTACCTGTCTCTGGCCATCTTTGCCGCAGGAAGCCAGGCAAGTGAGTCCCTCCTTGCCCGAGCCCGCTGC
TATGGGTTCCTGGGCCAGAAGAAGACGGCCATGTTCGACTTCAACACAGTGCTGCGGGCTGAGCCGGGGA
ACGTGCAGGCACTGTGTGGACGGGCGTTGGTGCACCTGGCCCTAGACCAGCTGCAGGAAGCCGTGGACGA
CATCGTCTCTGCTCTGAAGCTCGGCCCCGGGACTGTGGTCCCTGAGCTCCGCTCTCTGAAGCCGGAAGCC
CAGGCCCTCATCACACAGGGCCTCTACTCCCACTGCCGGGCCCTTCTGAGCCAGCTGCCAGACACTGGGG
CCCCTCTCGAGGACAAGGACACCCAGGGCCTCCTTGCTGTGGGGGAGGCGCTGATCAAAATCGACTCAGG
GCAACCGCACTGGCACCTCCTCCTGGCAGACATTCTCATGGCACAGGGCAGCTACGAGGAAGCTGGCACC
CACCTGGAAAAAGCCCTGCACCGTGCCCCAACGTCAGAGGCAGCCCGGGCCCGGCTGGGCCTGCTCCAGC
TCAAGAAGGGAGACGTGCCAGGGGCTGCAAGGGACCTGCAGAGCCTGGCCGAGGTGGATGCCCCGGATCT
CAGCTGCCTGCTGCATCTCCTGGAGGCCTCGGAGCGGCAGAGCCTTGCCCAGGCGGCGGCCCAGGAAGCC
GGCACCCTCCTGGACGCAGGGCAACCCAGGCAGGCGCTGGGCTACTGTTCGCTGTCTGTCCTGGCCAGTG
GCAGCAGTGCCTGTCACCTGCGTCTGCGGGCCACCTGCCTGGCCGAGTTGCAGGAGTTTGGCCGGGCCCT
TAGGGACCTGGACCATGTGCTCCAGGAGGCGCTGGGGGATGGTGACCTCCCAAGGCGGGCAGAGGACTTC
TGCCGTCAGGGTCGCCTGCTGCTGAGCCTGGGGGATGAGGCGGCGGCCGCAGGGGCCTTTGCCCAGGCCC
TGAAGCTGGCGCCCTCCTTGGCCCAGAACAGCCTGTGCAGGCAGCCAGGCCGGGCCCCCACTGCACGCAT
GTTCCTTCTCCGCGGGCAGTGCTGCCTGGAGGAGCAGCGTCACGCAGAGGCCTGGACGGCGGTAGAGAGC
GGCCTCCTGGTGGACCCCGACCACCGTGGCCTGAAGAGACTGAAGGCCAGAATCCGGAGGGAGGCATCCT
CAGGCTGCTGGCTACAGTGA

Translation (1079 aa):
MMSAQELVACLCREGEQHLALGELPLATAFYLAAFSCHAPSALQSVRTALAQARGAAVVATLESWCRGDS
QIPAIHWDGMAVVSLTGSLASAFLGALCPDHPAAILHLLAGLLARGRHEEVVQRCSALLDSHAQQVLELR
LTRALAWVLSGVQAADGVAAYLQAFASSADRTVAFIRTHQRPHLPALLSALQDYLSGHPEAGHSAGQQET
GGQRLLAALDPRGTRSDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGERRAALLVTRAASAFFLD
GRAQDVFWNLQEAFRESPSGARRQFQAVFSVQDQERVRAQAQEAADVGFARFQEAVRNHPELREDAGREL
LAPVTRALRVLLRLAPAGARPALGARLAECLLLAGDAAGARAMCERLLRPARPEDPAGDRAGDRAPLLAL
RGFCALHAGDSRRAMEDFQTVVEQGAPHPGGCVRALCGRGLLRVLAGSAFLGTLDYVTACRLRPEEALLA
AKAYVPWNQRGLLLVVLREEARGMLQRSPRAGPSRAQGRREAAETGGPTTQEGVACGVHQLATLLMELDS
EDEASRLLAADALYRLGRLEETHKALLVALSRRPQAAPVLARLALLQLRRGFFYDANQLVKKLVQSGDTA
CLQPTLDVFCHEDRQLLQGHCHARALAILRARPGGADGRVHTKEAIAYLSLAIFAAGSQASESLLARARC
YGFLGQKKTAMFDFNTVLRAEPGNVQALCGRALVHLALDQLQEAVDDIVSALKLGPGTVVPELRSLKPEA
QALITQGLYSHCRALLSQLPDTGAPLEDKDTQGLLAVGEALIKIDSGQPHWHLLLADILMAQGSYEEAGT
HLEKALHRAPTSEAARARLGLLQLKKGDVPGAARDLQSLAEVDAPDLSCLLHLLEASERQSLAQAAAQEA
GTLLDAGQPRQALGYCSLSVLASGSSACHLRLRATCLAELQEFGRALRDLDHVLQEALGDGDLPRRAEDF
CRQGRLLLSLGDEAAAAGAFAQALKLAPSLAQNSLCRQPGRAPTARMFLLRGQCCLEEQRHAEAWTAVES
GLLVDPDHRGLKRLKARIRREASSGCWLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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