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Report for CCDS56052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56052.1 Public Homo sapiens 18 DLGAP1 24 110 108 CCDS HistoryNCBI Gene:9229Re-query CCDS DB by CCDS ID:56052.1Re-query CCDS DB by GeneID:9229See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534970.5 ENSP00000437817.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534970.5Link to Ensembl Protein Viewer:ENSP00000437817.1Re-query CCDS DB by Nucleotide ID:ENST00000534970Re-query CCDS DB by Protein ID:ENSP00000437817
Original member Current member NCBI NM_001242762.2 NP_001229691.1 Accepted alive Link to Nucleotide Sequence:NM_001242762.2Link to Protein Sequence:NP_001229691.1Re-query CCDS DB by Nucleotide ID:NM_001242762Re-query CCDS DB by Protein ID:NP_001229691Link to BLAST:NP_001229691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229691.1 661 O14490-5 661 100% 0 0

Chromosomal Locations for CCDS 56052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3499185 3499394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3502493 3502645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3508570 3508661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3534194 3534615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3567490 3567581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3581875 3582164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3729135 3729375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3742335 3742512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3814059 3814273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3874614 3874706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGGATTTGAAGACATTAAAACTGTTTAATTCTCAGTTGAGATGTGGTTGGCTCTTATACATTTGGAATA
AAGCATTTATGGCACATCTCAGGGTTCCACAAGATGAATGGACAGGGTACACCCCACGAGGTAAAGATGA
TGAAATTCCATGCCGAAGAATGCGGAGTGGCAGTTATATCAAGGCCATGGGGGATGAAGACAGTGGAGAC
TCAGACACGAGTCCTAAGCCTTCTCCAAAAGTTGCTGCGCGGAGAGAAAGCTATCTCAAGGCTACTCAGC
CATCCCTTACAGAACTCACCACACTCAAAATCTCCAATGAACACTCACCCAAACTCCAGATCCGGAGTCA
TAGTTACCTGAGGGCAGTGAGTGAAGTCTCCATCAACCGGAGCCTGGACAGCCTGGACCCTGCAGGCTTG
CTCACATCACCAAAGTTCCGCTCCAGGAATGAGAGCTACATGCGAGCCATGAGCACCATCAGCCAGGTGA
GCGAGATGGAAGTGAACGGGCAGTTCGAGTCCGTGTGCGAGTCCGTGTTCAGCGAGCTGGAGTCGCAGGC
CGTGGAAGCGCTGGACCTGCCCATGCCCGGCTGCTTCCGCATGCGGAGCCACAGCTATGTGCGGGCCATT
GAGAAAGGCTGCTCCCAGGACGACGAGTGCGTGTCCCTGAGGTCGTCCTCGCCGCCGCGCACCACCACCA
CCGTTAGGACCATCCAGAGCAGCACGGCCCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGACGG
ACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTATG
AAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCATGGCCCTGCCAGTCAACACATGGGCA
ATAACACTGCCACCGTCACCACCACGACTACCATAGCCACCGTCACCACGGAGGACAGGAAGAAGGACCA
CTTTAAGAAAAATCGATGCCTGTCTATCGGGATACAGGTGGATGATGCTGAAGAACCTGACAAAACAGGG
GAGAATAAAGCACCCAGTAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGT
TCACTCGATCCAACAGTGTGACGACAGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTC
TCTGGAATCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCCCGCGATGCCAGCACC
TCCACAGTCAGCATTCAGGGCTCAGGAAACCATTACCATGCCTGTGCCGCCGATGATGACTTTGACACGG
ATTTTGACCCCTCTATTCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACTGAAGACCCTCTGGAGGC
CGTGCAAAGGTCAGTGTGCCACCGGGATGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGAGACCGC
ATGGAGGGGTGGTGTCAACAGATGGAGCGGGAAGAACGGGAAAACAACCTGCCCGAAGACATTCTAGGAA
AAATCCGAACCGCAGTGGGCAGTGCCCAACTTCTCATGGCCCAGAAATTCTACCAGTTCAGAGAACTGTG
TGAAGAAAACCTGAATCCTAATGCTCATCCAAGACCCACCTCCCAGGATTTGGCGGGGTTTTGGGACATG
CTGCAGTTGTCCATAGAAAATATTAGTATGAAATTTGATGAACTTCATCAGTTAAAGGCCAATAATTGGA
AACAGATGGATCCTCTTGACAAGAAGGAGAGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAGGG
CCCCGCGCCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGATG
GCCGCCAAGCGCGCCGCGTCCGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACA
TCCCCGAGGCGCAGACCCGGCTCTGA

Translation (661 aa):
MDLKTLKLFNSQLRCGWLLYIWNKAFMAHLRVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGD
SDTSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGL
LTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAI
EKGCSQDDECVSLRSSSPPRTTTTVRTIQSSTAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSM
KALTAAIEAANAQIHGPASQHMGNNTATVTTTTTIATVTTEDRKKDHFKKNRCLSIGIQVDDAEEPDKTG
ENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSCPGPMARQFSRDAST
STVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDR
MEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDM
LQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAKGPAPLIRERSLESSQRQEARKRLM
AAKRAASVRQNSATESAESIEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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