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Report for CCDS56080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56080.1 Public Homo sapiens 19 CCL25 24 110 108 CCDS HistoryNCBI Gene:6370Re-query CCDS DB by CCDS ID:56080.1Re-query CCDS DB by GeneID:6370See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253451.9 ENSP00000253451.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000253451.9Link to Ensembl Protein Viewer:ENSP00000253451.4Re-query CCDS DB by Nucleotide ID:ENST00000253451Re-query CCDS DB by Protein ID:ENSP00000253451
Original member Current member EBI ENST00000681526.1 ENSP00000505387.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681526.1Link to Ensembl Protein Viewer:ENSP00000505387.1Re-query CCDS DB by Nucleotide ID:ENST00000681526Re-query CCDS DB by Protein ID:ENSP00000505387
Original member Current member EBI ENST00000680450.1 ENSP00000506202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680450.1Link to Ensembl Protein Viewer:ENSP00000506202.1Re-query CCDS DB by Nucleotide ID:ENST00000680450Re-query CCDS DB by Protein ID:ENSP00000506202
Original member Current member NCBI NM_001201359.2 NP_001188288.1 Accepted alive Link to Nucleotide Sequence:NM_001201359.2Link to Protein Sequence:NP_001188288.1Re-query CCDS DB by Nucleotide ID:NM_001201359Re-query CCDS DB by Protein ID:NP_001188288Link to BLAST:NP_001188288.1
Original member Current member NCBI NM_001394638.1 NP_001381567.1 Accepted alive Link to Nucleotide Sequence:NM_001394638.1Link to Protein Sequence:NP_001381567.1Re-query CCDS DB by Nucleotide ID:NM_001394638Re-query CCDS DB by Protein ID:NP_001381567Link to BLAST:NP_001381567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188288.1 149 O15444-3 149 100% 0 0
NP_001381567.1 149 O15444-3 149 100% 0 0

Chromosomal Locations for CCDS 56080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8053050 8053122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8056152 8056269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8056366 8056499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8057804 8057920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8062218 8062225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGAACCTGTGGCTCCTGGCCTGCCTGGTGGCCGGCTTCCTGGGAGCCTGGGCCCCCGCTGTCCACACCC
AAGGTGTCTTTGAGGACTGCTGCCTGGCCTACCACTACCCCATTGGGTGGGCTGTGCTCCGGCGCGCCTG
GACTTACCGGATCCAGGAGGTGAGCGGGAGCTGCAATCTGCCTGCTGCGATATTCTACCTCCCCAAGAGA
CACAGGAAGGTGTGTGGGAACCCCAAAAGCAGGGAGGTGCAGAGAGCCATGAAGCTCCTGGATGCTCGAA
ATAAGGTTTTTGCAAAGCTCCACCACAACACGCAGACCTTCCAAGGCCCTCATGCTGTAAAGAAGTTGAG
TTCTGGAAACTCCAAGTTATCATCGTCCAAGTTTAGCAATCCCATCAGCAGCAGTAAGAGGAATGTCTCC
CTCCTGATATCAGCTAATTCAGGACTGTGA

Translation (149 aa):
MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKR
HRKVCGNPKSREVQRAMKLLDARNKVFAKLHHNTQTFQGPHAVKKLSSGNSKLSSSKFSNPISSSKRNVS
LLISANSGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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