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Report for CCDS56158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56158.1 Public Homo sapiens 2 CFLAR 24 110 108 CCDS HistoryNCBI Gene:8837Re-query CCDS DB by CCDS ID:56158.1Re-query CCDS DB by GeneID:8837See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443227.5 ENSP00000413270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443227.5Link to Ensembl Protein Viewer:ENSP00000413270.1Re-query CCDS DB by Nucleotide ID:ENST00000443227Re-query CCDS DB by Protein ID:ENSP00000413270
Original member Current member NCBI NM_001202517.3 NP_001189446.1 Accepted alive Link to Nucleotide Sequence:NM_001202517.3Link to Protein Sequence:NP_001189446.1Re-query CCDS DB by Nucleotide ID:NM_001202517Re-query CCDS DB by Protein ID:NP_001189446Link to BLAST:NP_001189446.1
Original member Current member NCBI NM_001351593.2 NP_001338522.1 Accepted alive Link to Nucleotide Sequence:NM_001351593.2Link to Protein Sequence:NP_001338522.1Re-query CCDS DB by Nucleotide ID:NM_001351593Re-query CCDS DB by Protein ID:NP_001338522Link to BLAST:NP_001338522.1
Original member Current member NCBI NM_001351594.2 NP_001338523.1 Accepted alive Link to Nucleotide Sequence:NM_001351594.2Link to Protein Sequence:NP_001338523.1Re-query CCDS DB by Nucleotide ID:NM_001351594Re-query CCDS DB by Protein ID:NP_001338523Link to BLAST:NP_001338523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189446.1 384 O15519-15 384 100% 0 0
NP_001338522.1 384 O15519-15 384 100% 0 0
NP_001338523.1 384 O15519-15 384 100% 0 0

Chromosomal Locations for CCDS 56158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 201133036 201133134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201135972 201136107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201140357 201140439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201145378 201145432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201149003 201149052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201149754 201149835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201160432 201160942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 201163835 201163973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACA
TG
GGCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCT
G
GTTGCCCCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACA
AAA
ATCCAGAAGTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAA
TC
CAAAAGAGTCTCAAGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACT
T
AAGGAACAGCTTGGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCT
CAG
AGCATACCTGAAGAGAGATACAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCA
TT
GGCAATGAGACAGAGCTTCTTCGAGACACCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCA
T
CTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATTTGCCTGTATGCCCGAGCACCGAGACTACGAC
AGC
TTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGTATGGTGTGGATCAGACTCACTCAG
GG
CTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGCCCTTATCTAGCAGGGAAGCCAAA
G
ATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAGCAGCCTCTTGGAGGTGGAT
GGG
CCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAGTTCACCGAGAAGCTG
AC
TTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCACCATCCCTGTA
C
CTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACATTGAACTC
AAT
GGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGCACA
CT
CTGAGAAAGAAACTTATCCTCTCCTACACATAA


Translation (384 aa):
MAEIGEDLDKSDVSSLIFLMKDYMGRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCLKNIHRIDLKT
K
IQKYKQS
VQGAGTSYRNVLQAAIQKSLKDPSNNFRLHNGRSKEQRLKEQLGAQQEPVKKSIQESEAFLP
Q
SIPEERYKMKSKPLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYD
S
FVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLEDSSLLEVD
G
PAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQE
RKRPLLDLHIEL
N
GYMYDWNSRVSAKEKYYVWLQHTLRKKLILSYT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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