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Report for CCDS56265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56265.1 Public Homo sapiens 3 TBC1D23 24 110 108 CCDS HistoryNCBI Gene:55773Re-query CCDS DB by CCDS ID:56265.1Re-query CCDS DB by GeneID:55773See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394144.9 ENSP00000377700.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394144.9Link to Ensembl Protein Viewer:ENSP00000377700.4Re-query CCDS DB by Nucleotide ID:ENST00000394144Re-query CCDS DB by Protein ID:ENSP00000377700
Original member Current member NCBI NM_001199198.3 NP_001186127.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199198.3Link to Protein Sequence:NP_001186127.1Re-query CCDS DB by Nucleotide ID:NM_001199198Re-query CCDS DB by Protein ID:NP_001186127Link to BLAST:NP_001186127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186127.1 699 Q9NUY8-1 699 100% 0 0

Chromosomal Locations for CCDS 56265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100261019 100261071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100279649 100279760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100281742 100281847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100283607 100283811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100290578 100290701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100295087 100295211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100295302 100295348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100296172 100296275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100297923 100298045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100299239 100299331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100302067 100302237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100304846 100304888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100306437 100306543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100310403 100310542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100311833 100311877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100316099 100316187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100319069 100319204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100320777 100320971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100323587 100323668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGGCGGAAGGAGAAGATGTGCCGCCGCTGCCAACGTCGAGCGGCGACGGCTGGGAAAAAGATCTTGAAG
AAGCTCTGGAAGCAGGAGGTTGTGATCTTGAAACGTTGAGAAATATAATTCAAGGAAGACCGCTGCCTGC
TGATCTGAGGGCCAAAGTTTGGAAGATTGCTCTGAATGTTGCAGGAAAAGGTGATAGTTTGGCATCATGG
GATGGTATTTTAGACTTGCCAGAACAGAACACTATTCACAAAGATTGCCTGCAGTTTATTGACCAGCTTT
CAGTGCCAGAGGAGAAGGCAGCAGAATTACTTTTGGATATTGAATCTGTAATTACCTTTTATTGTAAATC
ACGTAACATTAAATATAGCACATCCCTTAGCTGGATACATCTACTGAAACCATTGGTGCATCTTCAACTG
CCACGCAGCGATTTATACAACTGCTTTTATGCCATAATGAATAAGTACATTCCCAGGGATTGTTCCCAGA
AAGGGAGACCATTTCATCTCTTCAGGTTGCTCATCCAATACCATGAGCCTGAGCTTTGTTCTTATCTTGA
TACAAAGAAAATTACTCCAGACTCCTATGCACTCAACTGGCTTGGAAGTCTTTTTGCATGTTACTGTTCC
ACTGAAGTCACTCAGGCAATATGGGATGGATATCTACAACAAGCAGATCCATTTTTTATTTATTTCTTAA
TGTTAATTATCCTTGTTAATGCAAAAGAAGTTATTTTAACACAAGAGTCAGACAGCAAAGAAGAAGTTAT
CAAGTTCTTGGAAAATACTCCATCCAGTCTGAATATAGAAGATATAGAAGACCTTTTCTCTCTGGCTCAG
TATTATTGCAGCAAAACACCGGCTTCTTTTAGGAAGGATAATCACCATCTCTTTGGTAGTACTTTGTTGG
GAATTAAGGATGATGATGCAGATCTGAGTCAGGCTCTTTGTCTGGCCATCTCCGTGTCAGAGATCCTTCA
AGCGAATCAGCTACAAGGGGAAGGAGTCCGGTTCTTTGTGGTGGATTGCCGTCCTGCAGAACAATATAAT
GCTGGGCATTTATCAACTGCTTTCCACTTAGATTCAGACCTGATGCTTCAGAATCCATCTGAGTTTGCAC
AGTCAGTAAAATCCTTGCTGGAAGCACAGAAGCAGTCCATTGAGTCTGGCTCCATAGCTGGTGGGGAGCA
CCTCTGTTTTATGGGCAGTGGCAGGGAGGAAGAAGACATGTATATGAACATGGTCCTGGCACACTTTTTA
CAGAAAAACAAAGAATATGTGAGTATTGCCAGTGGAGGATTTATGGCACTGCAGCAGCACCTGGCAGACA
TTAATGTGGATGGACCAGAAAATGGATATGGCCATTGGATTGCTAGTACCTCAGGCTCAAGGAGCAGTAT
CAATTCTGTTGATGGTGAATCTCCTAATGGCTCAAGTGATAGAGGAATGAAATCACTAGTAAATAAAATG
ACTGTGGCTTTGAAGACAAAATCCGTTAATGTCAGGGAAAAAGTTATCAGTTTTATAGAGAATACATCAA
CTCCTGTGGATCGAATGTCTTTCAATCTTCCTTGGCCAGACAGATCATGTACAGAGCGGCATGTGAGCAG
CAGTGACAGAGTGGGCAAGCCTTACCGTGGCGTAAAGCCTGTTTTCAGCATTGGGGATGAAGAAGAATAC
GACACAGATGAAATTGACAGTTCTTCAATGTCAGATGATGATAGAAAAGAGGTTGTAAACATTCAGACTT
GGATAAACAAACCAGATGTCAAACATCATTTTCCTTGTAAAGAAGTAAAAGAAAGTGGACACATGTTTCC
CAGTCATCTGTTGGTTACTGCAACACATATGTACTGTTTAAGGGAGATTGTTTCACGGAAAGGATTGGCT
TATATACAGTCTCGACAAGCGCTGAATTCTGTAGTTAAAATTACATCCAAAAAAAAACATCCTGAACTCA
TTACCTTCAAGTATGGAAATAGCAGTGCTTCAGGAATAGAAATCTTGGCAATCGAAAGGTATTTGATTCC
AAATGCAGGGGATGCAACTAAAGCCATAAAACAGCAGATCATGAAAGTTTTGGATGCTTTGGAAAGTTAA

Translation (699 aa):
MAEGEDVPPLPTSSGDGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNVAGKGDSLASW
DGILDLPEQNTIHKDCLQFIDQLSVPEEKAAELLLDIESVITFYCKSRNIKYSTSLSWIHLLKPLVHLQL
PRSDLYNCFYAIMNKYIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKITPDSYALNWLGSLFACYCS
TEVTQAIWDGYLQQADPFFIYFLMLIILVNAKEVILTQESDSKEEVIKFLENTPSSLNIEDIEDLFSLAQ
YYCSKTPASFRKDNHHLFGSTLLGIKDDDADLSQALCLAISVSEILQANQLQGEGVRFFVVDCRPAEQYN
AGHLSTAFHLDSDLMLQNPSEFAQSVKSLLEAQKQSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFL
QKNKEYVSIASGGFMALQQHLADINVDGPENGYGHWIASTSGSRSSINSVDGESPNGSSDRGMKSLVNKM
TVALKTKSVNVREKVISFIENTSTPVDRMSFNLPWPDRSCTERHVSSSDRVGKPYRGVKPVFSIGDEEEY
DTDEIDSSSMSDDDRKEVVNIQTWINKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCLREIVSRKGLA
YIQSRQALNSVVKITSKKKHPELITFKYGNSSASGIEILAIERYLIPNAGDATKAIKQQIMKVLDALES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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