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Report for CCDS56288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56288.1 Public Homo sapiens 3 MLF1 24 110 108 CCDS HistoryNCBI Gene:4291Re-query CCDS DB by CCDS ID:56288.1Re-query CCDS DB by GeneID:4291See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000469452.5 ENSP00000418595.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469452.5Link to Ensembl Protein Viewer:ENSP00000418595.1Re-query CCDS DB by Nucleotide ID:ENST00000469452Re-query CCDS DB by Protein ID:ENSP00000418595
Original member Current member EBI ENST00000618075.4 ENSP00000484169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618075.4Link to Ensembl Protein Viewer:ENSP00000484169.1Re-query CCDS DB by Nucleotide ID:ENST00000618075Re-query CCDS DB by Protein ID:ENSP00000484169
Original member Current member NCBI NM_001195433.2 NP_001182362.1 Accepted alive Link to Nucleotide Sequence:NM_001195433.2Link to Protein Sequence:NP_001182362.1Re-query CCDS DB by Nucleotide ID:NM_001195433Re-query CCDS DB by Protein ID:NP_001182362Link to BLAST:NP_001182362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182362.1 200 P58340-2 200 100% 0 0

Chromosomal Locations for CCDS 56288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158592462 158592581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158596862 158596945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158600014 158600173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158602807 158602939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158605097 158605202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCGACAGATGATAAGAAGTTTTTCTGAACCCTTTGGAAGAGACTTGCTCAGTATCTCTGATGGTAGAG
GGAGAGCTCATAATCGTAGAGGACATAATGATGGTGAAGATTCTTTGACTCATACAGATGTCAGCTCTTT
CCAGACAATGGACCAAATGGTGTCAAATATGAGAAACTATATGCAGAAATTAGAAAGAAACTTCATAAAG
GAAACCAGGAAAGCAATGAGAGATTCTGACAGTGGACTAGAAAAAATGGCTATTGGTCATCATATCCATG
ACCGAGCTCATGTCATTAAAAAGTCAAAGAACAAGAAGACTGGAGATGAAGAGGTCAACCAGGAGTTCAT
CAATATGAATGAAAGTGATGCTCATGCTTTTGATGAGGAGTGGCAAAGTGAGGTTTTGAAGTACAAACCA
GGACGACACAATCTAGGAAACACTAGAATGAGAAGTGTTGGCCATGAGAATCCTGGCTCCCGAGAACTTA
AAAGAAGGGAGAAACCTCAACAAAGTCCAGCCATTGAACATGGAAGGAGATCAAATGTTTTGGGGGACAA
ACTCCACATCAAAGGCTCATCTGTGAAAAGCAACAAAAAATAA

Translation (200 aa):
MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFIK
ETRKAMRDSDSGLEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKP
GRHNLGNTRMRSVGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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