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Report for CCDS56464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56464.1 Public Homo sapiens 7 LRRC72 24 110 108 CCDS HistoryNCBI Gene:100506049Re-query CCDS DB by CCDS ID:56464.1Re-query CCDS DB by GeneID:100506049See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401542.3 ENSP00000384971.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401542.3Link to Ensembl Protein Viewer:ENSP00000384971.2Re-query CCDS DB by Nucleotide ID:ENST00000401542Re-query CCDS DB by Protein ID:ENSP00000384971
Original member Current member NCBI NM_001195280.2 NP_001182209.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195280.2Link to Protein Sequence:NP_001182209.1Re-query CCDS DB by Nucleotide ID:NM_001195280Re-query CCDS DB by Protein ID:NP_001182209Link to BLAST:NP_001182209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182209.1 287 A6NJI9 287 100% 0 0

Chromosomal Locations for CCDS 56464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16526953 16527042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16532495 16532568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16537627 16537696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16557360 16557441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16558889 16558999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16566313 16566402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16567391 16567543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16580074 16580101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16581324 16581489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGTCCTGGGACCCGAACCCCGTGCCCCGTACCTTGCGATGCTGGCGCCTACGGAGGGCATCCGAAACTG
CCCTACAGAGCAGTCGCCGGGCAGTTGAAGATCAGCTAAAGATATGTGGCCACAGGAGGGATGCTGATGT
CTTTGAGCTGTTCCTTTCTAAAAAGGAACTGACAGAGGTCATTGATCTTTCTAGGTTTAAAAAATTAAAA
TACTTATGGCTTCATCATAACAAGCTCCATGGAATAACATTTCTAACTAGAAACTATTGTCTGACAGAAC
TATATCTAAACAACAATGCAATATTTGAGATAGAAGGTCTGCATTATTTGCCTTCATTGCATATACTCCT
GCTACACCACAATGAGCTAACCAACATTGATGCAACAGTGAAGGAATTAAAGGGAATGCTAAATCTGAAG
ATCCTAAGTCTATACCAAAATCCTTTGTGCCAATATAACCTGTATCGTTTATATATCATCTACCACCTTC
CAGGAGTGGAGCTGCTTGACCGAAATCAAGTTACAGAAAAAGAAAGAAGATCAATGATTACCATTTTTAA
CCATAAAAAGGCTCATATCGTTCAATCAATAGCATTCGGAGGAAAAGTGGATGCTTCATGGGATCCTAAA
TCACCATTTAAGCAAAAACCAGCCCAGAGAGTACCTTCAGATTTTGCATTTGCAAATAATGTAGACAAAA
CTGTGCTTGATGACCCAGAAGATGCTGTTTTTGTGAGGTCCATGAAGAGATCAGTGATGACTTTGACCTC
TATGAACTGGGACACAGTTCCAACACGAGAGGAAAGGTACCTTGAAGAGGAAGGCACAGAAACAGCTCAA
ATGCTCACAGTTACACTGAGATAA

Translation (287 aa):
MSWDPNPVPRTLRCWRLRRASETALQSSRRAVEDQLKICGHRRDADVFELFLSKKELTEVIDLSRFKKLK
YLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEIEGLHYLPSLHILLLHHNELTNIDATVKELKGMLNLK
ILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERRSMITIFNHKKAHIVQSIAFGGKVDASWDPK
SPFKQKPAQRVPSDFAFANNVDKTVLDDPEDAVFVRSMKRSVMTLTSMNWDTVPTREERYLEEEGTETAQ
MLTVTLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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