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Report for CCDS56649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56649.1 Public Mus musculus 1 4930558K02Rik 23 108 98 CCDS HistoryNCBI Gene:75368Re-query CCDS DB by CCDS ID:56649.1Re-query CCDS DB by GeneID:75368See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162676.1 ENSMUSP00000124751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162676.1Link to Ensembl Protein Viewer:ENSMUSP00000124751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162676Re-query CCDS DB by Protein ID:ENSMUSP00000124751
Original member Current member NCBI NM_001204904.1 NP_001191833.1 Accepted alive Link to Nucleotide Sequence:NM_001204904.1Link to Protein Sequence:NP_001191833.1Re-query CCDS DB by Nucleotide ID:NM_001204904Re-query CCDS DB by Protein ID:NP_001191833Link to BLAST:NP_001191833.1

Chromosomal Locations for CCDS 56649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161942390 161942535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161949584 161949642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161952600 161952667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161957093 161957176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161964822 161964906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161967911 161967996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161979486 161979506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGAAAAAAGAGAGCTAAAGGCTTTTGTTCCAAAGTTTGACAAGATTCCTTGGCTGAGTGAGGCCAGCC
TGGTAAACAAACCATTGATCCTGAGCATCCCCAGAAGGTACCACTCCTCCTTTGTTCTGACTTCGTACAA
GAAGGATATGTATTTGCCACACTTGCTTGAAAATCCAGACTTCCTATCAAAGGCTAGAAAGAATGAGCAT
GAAAACCTGTCGCCCAGAAACAAGCAACTGTGCGCTACATGTCGAGGATATCAAAAAGTGAAAACGGTAC
AGCCAAAAACTTTCATAATACCTGACCATCAGAAACCACCCTCCCAGAATTCTGTGAATCACAGAGAGGT
GAGCCTTCATTCGCAAGTGCAGCAGTTAAACTCCTACAATGATATTCCAACAGAGAGCATTAGCTACAGA
CTGCCCATCTTAGGTCCTAGGACTGCTGTCTTCCACAGGCTCCTGTCAAGTGCCTATGAAAATCCTCGGG
ATACTCAACACCGTGCCTTTCCCAGAAAGAAAGGAATGAGCAAGACAGTGAAGCAGTAA

Translation (182 aa):
MEKRELKAFVPKFDKIPWLSEASLVNKPLILSIPRRYHSSFVLTSYKKDMYLPHLLENPDFLSKARKNEH
ENLSPRNKQLCATCRGYQKVKTVQPKTFIIPDHQKPPSQNSVNHREVSLHSQVQQLNSYNDIPTESISYR
LPILGPRTAVFHRLLSSAYENPRDTQHRAFPRKKGMSKTVKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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