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Report for CCDS56733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56733.1 Public Mus musculus 10 Or7a38 23 108 98 CCDS HistoryNCBI Gene:259163Re-query CCDS DB by CCDS ID:56733.1Re-query CCDS DB by GeneID:259163See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075859.4 ENSMUSP00000093126.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075859.4Link to Ensembl Protein Viewer:ENSMUSP00000093126.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075859Re-query CCDS DB by Protein ID:ENSMUSP00000093126
Original member Current member EBI ENSMUST00000204587.3 ENSMUSP00000144801.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204587.3Link to Ensembl Protein Viewer:ENSMUSP00000144801.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000204587Re-query CCDS DB by Protein ID:ENSMUSP00000144801
Original member Current member EBI ENSMUST00000217073.2 ENSMUSP00000150374.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217073.2Link to Ensembl Protein Viewer:ENSMUSP00000150374.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217073Re-query CCDS DB by Protein ID:ENSMUSP00000150374
Original member Current member NCBI NM_001199840.1 NP_001186769.1 Accepted alive Link to Nucleotide Sequence:NM_001199840.1Link to Protein Sequence:NP_001186769.1Re-query CCDS DB by Nucleotide ID:NM_001199840Re-query CCDS DB by Protein ID:NP_001186769Link to BLAST:NP_001186769.1

Chromosomal Locations for CCDS 56733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78916842 78917774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAATCAGGCAACAGCACAAGAAGAATTCCAAGTTTTTTTCTTCTTGGATTTTCAGAAAACCCACACC
TTCAATTCCTCATTTTTGTACTGTTCCTTTCCATGTACCTGGTAACAGTGCTTGGGAACCTGCTTATCAT
CATGGTCATCATCACACAGTCTCACCTGCACACACCCATGTACTTCTTCCTTGCTAACCTGTCCTTTGTG
GACATCTGTTTTACCTCCACCACTGTCCCAAAGATGCTGGTAAATATACAGACTCAAAGCAAGGCCATTA
CATATGCAGACTGTATTAGCCAGATGTCTGTCTTCTTGGTTTTTGCAGAATTGGACAACTTTCTCCTGGC
TGTGATGGCCTATGACCGATATGTGGCTATCTGTCACCCATTATATTACACAGTCATTGTTAACCAACAG
CTCTGTATACTGATGGTTCTGCTGTCCTGGGTTGTTAGCATCCTACATGCCTTCTTACAGAGCTCAATTG
TGCTACAGTTGACCTTTTGTGGAGATGTAAAAATTCCCCACTTCTTCTGTGAGCTTAACCAGCTGTCTCA
ACTCACATGTTCAGACAGCTTTTCAAGCCAACTCATAATGAATCTTGTACCTGTTCTATTGGCAGTCATT
TCCTTCAGTAGTATCCTTTACTCTTATTTCAAGATAGTGTCCTCCATATGTTCTATCTCCTCAGTTCAAG
GGAAGTACAAGGCATTTTCTACATGTGTCTCTCACCTTTCCATTGTCTCCTTATTTTATAGTACAGGCCT
TGGAGTGTATGTCAGTTCTGTTGTGATCCAAAGCTCTCACTCTGCTGCAAGAGCCTCTGTGATGTATACT
GTGGTCACCCCGATGCTGAACCCCTTTATTTATAGTCTAAGGAATAAAGATGTGAAGAAAGCTGTGGAAA
GACTATTAGAAGGAAAACTGTAA

Translation (310 aa):
MESGNSTRRIPSFFLLGFSENPHLQFLIFVLFLSMYLVTVLGNLLIIMVIITQSHLHTPMYFFLANLSFV
DICFTSTTVPKMLVNIQTQSKAITYADCISQMSVFLVFAELDNFLLAVMAYDRYVAICHPLYYTVIVNQQ
LCILMVLLSWVVSILHAFLQSSIVLQLTFCGDVKIPHFFCELNQLSQLTCSDSFSSQLIMNLVPVLLAVI
SFSSILYSYFKIVSSICSISSVQGKYKAFSTCVSHLSIVSLFYSTGLGVYVSSVVIQSSHSAARASVMYT
VVTPMLNPFIYSLRNKDVKKAVERLLEGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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