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Report for CCDS56810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56810.1 Public Mus musculus 11 Nbr1 23 108 98 CCDS HistoryNCBI Gene:17966Re-query CCDS DB by CCDS ID:56810.1Re-query CCDS DB by GeneID:17966See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107208.7 ENSMUSP00000102826.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107208.7Link to Ensembl Protein Viewer:ENSMUSP00000102826.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107208Re-query CCDS DB by Protein ID:ENSMUSP00000102826
Original member Current member NCBI NM_001252223.1 NP_001239152.1 Accepted alive Link to Nucleotide Sequence:NM_001252223.1Link to Protein Sequence:NP_001239152.1Re-query CCDS DB by Nucleotide ID:NM_001252223Re-query CCDS DB by Protein ID:NP_001239152Link to BLAST:NP_001239152.1

Chromosomal Locations for CCDS 56810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101556190 101556291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101559519 101559581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101560433 101560451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101562297 101562319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101564629 101564826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101565704 101565781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101566196 101566410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101567095 101567262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101568399 101568608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101569256 101569415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101569498 101569788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101571284 101571433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101571902 101571977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101572462 101572572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101572808 101572972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101573103 101573177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101574999 101575416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101576303 101576409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101577194 101577251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101580585 101580618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2721 nt):
ATGGAACCACAGGTTACTCTAAATGTGACTTTTAAAAATGAAACTCAAAGCTTTCTGGTTTCGGATCCAG
AAAATACAACCTGGGCTGATGTTGAAGCTATGGTAAAAGTTTCATTTGATCTGAATACTATCCAGATAAA
ATACCTGGATGAGGAGAACGAGGAGATATCCATCAATAGTCAAGGTGAATATGAAGAAGCACTTAAGATG
GCTAACATTAAGCAAGGAAATCAGCTACAGATGCAAGTCCACGAAGGGTACCATGTTGTAGATGAAGCAC
TCCCCAAAAATGTGGTAGAAAACCAAGCGGCTGCCAGGACAGGGAAGAAGCCACTTGCACATTATTCTTC
ACTGGTGAGAGTCTTGGGATCAGACATGAAGACCACAGAGGAGCCTGCACCAGAGCAATGTTCTTCTGCT
CCTTGTGACACAGACCAGCCTCAAGACAAGCCCCCAGATTGGTTTACAAGCTACCTGGAGATGTTCCGAG
AACAAGTGGTTAAGGAAACGGTGGAGAAACTTGAACAGAGGTTGCAGGAGAAGCTTGTCCTCCAGAAGCC
ACTCCTGAGTTCCTCACCCACAGAAGTCTCAATGCCTATTTCAGAGGAAACCCTGTTTTTGCCAGAGAAC
CAGTTCAGCTGGCATATTGCTTGTAGCCACTGCCAGAAGAGGATCGTTGGAGTGCGCTACCAGTGTAGCC
TATGCCCATCCTACAACATTTGTGAAGATTGTGAAGCTGGACCATACACCCATGACACTAACCATGTTTT
GTTAAAGCTGCGGAGACCTGTTGTGATATCCTCTGAGCCATTTTTCTACTCCAAGTATTCCGCTCCTCGT
CTGCCTGCTGCTTTGGAACAAGTCAGGCTCCAAAAACAGGTGGACAAGAACTTTGTGAAAGCAGAAAAGC
AAAGGTTGCGGGCTGAGAAGAAACAGCGGAAGGCAGAGGTCAAAGAGCTTAAAAAGCAGCTTAAACTCCA
CAGGAAGATTCATTTATGGAATTCAATCCATGGACTTCAGAGTCCCAAGTCCCCTTTGGGCCGACCTGAG
AGCTTGCTGCAGTCTAACACCCTGATGCTTCCTTTGCAGCCCTGTGCCCCAGTTATGCCAACACTCAGTG
CAGCATTTGTGGATGAGAATTTGCCTGATGGGACTCATCTTCAGCCAGGAACCAAGTTTATTAAACACTG
GAGGATGAAAAACACGGGGAATGTGAAGTGGAACACAGACACAAAGCTCAAGTTCATGTGGGGAAACTTG
ACTCTGGCTTCTACAGAGAAGAAAGATGTTTTGGTTCCCTGCTTGAAGGCTGGCCACGTTGGGGTCGTGT
CTGTGGAGTTCATCGCTCCAACCTTGGAGGGGACATACACTTCGCACTGGCGTCTCTCTCACAAAGGCCA
GCAGTTTGGGCCTCGGGTTTGGTGCAGTATCATAGTGGATCCTTTTCCTTCCTCTGAGAGCCCTGATAAT
GTTGAAGGGGACAGGATCAGCTCAAGCAAAGCTGACGATTTCTCCTGTGAGCAAGAGGAAGCTTTTCTTC
TAGCTGAAGAAGAGATTCCATTGGGTGAGGTGACAAAGCAGACAGAAGGGACAGGAGCCAGTGCCTCACA
GAAGACAAGACGCGCTGCCAGTGAAAGGGAGCTGTACATTCCATCTGTGGACCTCCTGACTGCCCAGGAC
CTGCTGTCCTTTGAGCTGCTGGATATAAACATTGTCCAAGAATTGGAGAGAGTGCCACACAACACCCCTG
TGGATATGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCA
GATACAGGAAGAGAGTGAAGGGGCGGGATTTAAAGCACCTCCTGATTCCACTGTATCAGCAAAGAGGAAA
GCTGAGACCCCTGCTTCGGTCGAAGAAACAGAAGAAGACCTGAGTGGGACCCAATTTGTATGTGAGACTG
TAATTCGATCCCTTACCTTGGATGCTGCTCCAGACCACAACCCTCCTTGCAGGCAGAGGTCCCCACAGAG
GGAATTACAGCTGTATTCCACCGAGGGACAGCAGCCACTTGTGCTGCCTGGATTCTGCAGAAAGGATTCT
TCCTTGAAATTTGCCTTGCCTGAAGAAGGACCGCGTGGAGATGAGAGGGAGGAGATTGTCCACATTGTTG
AGGAAGAAGTCGTTGAGGAAGAGGAGGAAGTCCAAGATGAAGAAGTCCAAAGTCAGTCTTCTGCTTCCTC
TGAAGATTATATCATCATCCTTCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGACTCCATGTACAGC
TCTGCGCTCTCCCAGCCAGGCCTGGAGCGAGGGGCTGAAGGCGAACCTGGGATCGAGTCTGGGCTGGAAC
CAACTGAGGCTAGAGAGAGACTCCCAGAGAGGGAGAGCCAGCCACAGGAGCAGAGCATCAGCGACATCCT
CACAACCTCACAGCCTCTGGACACGGTGCCTCTAGTCCCCGAGGTGGCAGGACTTCCAGCAGCATTGTCC
AGGAGCGCCCCTTGTGGACAGTGTGAGTCATCAGGAGTGGATTCACCAGGAGTGGATTCACCAGCTACCA
TGCACGAAGTTCCCCCAGCCCCTGATGACATCAGAGGAGAGCCCAGAGGCTCAACAGGACTCGCAAACAG
CAGACAGAGGAGCTGTGACCACTCAAGCCCATCGTTTCTGAAGATCAGACCACAGCCCTGA

Translation (906 aa):
MEPQVTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEYEEALKM
ANIKQGNQLQMQVHEGYHVVDEALPKNVVENQAAARTGKKPLAHYSSLVRVLGSDMKTTEEPAPEQCSSA
PCDTDQPQDKPPDWFTSYLEMFREQVVKETVEKLEQRLQEKLVLQKPLLSSSPTEVSMPISEETLFLPEN
QFSWHIACSHCQKRIVGVRYQCSLCPSYNICEDCEAGPYTHDTNHVLLKLRRPVVISSEPFFYSKYSAPR
LPAALEQVRLQKQVDKNFVKAEKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPE
SLLQSNTLMLPLQPCAPVMPTLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWNTDTKLKFMWGNL
TLASTEKKDVLVPCLKAGHVGVVSVEFIAPTLEGTYTSHWRLSHKGQQFGPRVWCSIIVDPFPSSESPDN
VEGDRISSSKADDFSCEQEEAFLLAEEEIPLGEVTKQTEGTGASASQKTRRAASERELYIPSVDLLTAQD
LLSFELLDINIVQELERVPHNTPVDMTPCMSPLPHDSPLIEKPGLGQIQEESEGAGFKAPPDSTVSAKRK
AETPASVEETEEDLSGTQFVCETVIRSLTLDAAPDHNPPCRQRSPQRELQLYSTEGQQPLVLPGFCRKDS
SLKFALPEEGPRGDEREEIVHIVEEEVVEEEEEVQDEEVQSQSSASSEDYIIILPECFDTSRPLGDSMYS
SALSQPGLERGAEGEPGIESGLEPTEARERLPERESQPQEQSISDILTTSQPLDTVPLVPEVAGLPAALS
RSAPCGQCESSGVDSPGVDSPATMHEVPPAPDDIRGEPRGSTGLANSRQRSCDHSSPSFLKIRPQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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