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Report for CCDS56835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56835.1 Public Mus musculus 12 Cbll1 23 108 98 CCDS HistoryNCBI Gene:104836Re-query CCDS DB by CCDS ID:56835.1Re-query CCDS DB by GeneID:104836See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188326.2 ENSMUSP00000139809.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188326.2Link to Ensembl Protein Viewer:ENSMUSP00000139809.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000188326Re-query CCDS DB by Protein ID:ENSMUSP00000139809
Original member Current member NCBI NM_001253848.1 NP_001240777.1 Accepted alive Link to Nucleotide Sequence:NM_001253848.1Link to Protein Sequence:NP_001240777.1Re-query CCDS DB by Nucleotide ID:NM_001253848Re-query CCDS DB by Protein ID:NP_001240777Link to BLAST:NP_001240777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240777.1 332 Q9JIY2-4 332 100% 0 0

Chromosomal Locations for CCDS 56835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31487279 31487461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31487927 31488314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31490468 31490541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31491512 31491595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31492079 31492176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31494591 31494749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31499523 31499535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCCTTGGGTGGTCTTGATGTTCGCA
GAAGAATCCCTATAAAGCTCATCTCCAAACAAGCCAGCAAAGTTAAGCCGGCACCTCGGACTCAAAGGAC
TGTCAGCAGGATGCCCGCAAAGGCCCCGCAAGGATTTGATTATAACGAAGAACAGCGATATGACTGTAAA
GGAGGCGAACTCTTTGGGAATCAGCGAAGATTTCCAGGACACCTTTTTTGGGATTTCAAGATAAACATCT
TAGGTGAAAAGGACGATACACCAGTACATTTCTGTGACAAATGTGGACTGCCTATTAAAGTCTATGGGAG
AATGATTCCATGCAAGCATGTCTTTTGCTATGACTGTGCTATTTTACATGAAAAAAAAGGAGATAAGATG
TGCCCAGGATGTAGTGATCCTGTGCAGCGGATTGAGCAGTGCACACGAGGTTCTCTCTTTATGTGTAGCA
TTGTTCAAGGATGCAAGAGAACATATCTGTCTCAGAGAGACTTACAAGCTCATATCAACCATCGCCATAT
GAGAGCTGGAAAGCCCGTTACCCGTGCTTCACTTGAGAATGTTCATCCTCCTATTGCCCCCCCACCAACT
GACATCCCCGATCGGTTCATAATGCCACCAGACAAGCATCATATGAGCCATATTCCTCCAAAGCAGCACA
TCATGATGCCACCGCCTCCTCTGCAGCATGTGCCACATGAGCACTATAATCAGCCACATGAGGATATTCG
TGCTCCTCCGGCAGAATTGTCCATGGCTCCACCTCCACCTCGTTCGTTTACTGAAGACCAAGGAACTCTG
AGCCCTCCATTTACACAACCAGGAGGAATGAGTCCTGGTATATGGCCTGCACCAAGAGGGCCACCTCCTC
CTCCACGAATGCAGGGCCCGCCTTCTCAAACCCCACTACCTGGACCGCATCATCCAGATCAAACAAGATA
CAGACCGTATTACCAGTGA

Translation (332 aa):
MDHTDNELQGTNSSGSLGGLDVRRRIPIKLISKQASKVKPAPRTQRTVSRMPAKAPQGFDYNEEQRYDCK
GGELFGNQRRFPGHLFWDFKINILGEKDDTPVHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKM
CPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAGKPVTRASLENVHPPIAPPPT
DIPDRFIMPPDKHHMSHIPPKQHIMMPPPPLQHVPHEHYNQPHEDIRAPPAELSMAPPPPRSFTEDQGTL
SPPFTQPGGMSPGIWPAPRGPPPPPRMQGPPSQTPLPGPHHPDQTRYRPYYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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