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Report for CCDS56839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56839.1 Public Mus musculus 12 Prps1l3 23 108 98 CCDS HistoryNCBI Gene:328099Re-query CCDS DB by CCDS ID:56839.1Re-query CCDS DB by GeneID:328099See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139049.1 ENSMUSP00000133736.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139049.1Link to Ensembl Protein Viewer:ENSMUSP00000133736.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139049Re-query CCDS DB by Protein ID:ENSMUSP00000133736
Original member Current member NCBI NM_001037746.3 NP_001032835.2 Accepted alive Link to Nucleotide Sequence:NM_001037746.3Link to Protein Sequence:NP_001032835.2Re-query CCDS DB by Nucleotide ID:NM_001037746Re-query CCDS DB by Protein ID:NP_001032835Link to BLAST:NP_001032835.2

Chromosomal Locations for CCDS 56839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57238426 57239382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTCGAATATCAAAATCTTCAGCGGGAGCTCGCACCAGGACTTATCCCAGAAAATAGCTGACCGCCTGG
GCTTGGAGCTAGGCAAGGTGGTGACTAAGAAATTCAGCAACCAGGAGACCTGTGTGGAAATTGGAGAAAG
CGTTCGTGGAGAGGATGTCTACATTGTTCAGAGTGGATGTGGTGAGATAAATGACAATCTAATGGAGCTT
TTGATCATGATTAATGCTTGCAAGATTGCTTCAGCCAGCAGGGTTACTGCAGTCATCCCATGCTTCCCTT
ATGCCCGCCAAGATAAGAAGGATAAGAGCCGGGCTCCAATCTCAGCTAAGCTTGTTGCAAATATGCTATC
TGTAGCAGGTGCGGATCATATTATCACCATGGATCTACATGCATCTCAAATTCAGGGTTTCTTTGATATC
CCGGTGGACAATTTATATGCAGAGCCAGCTGTCCTAAAGTGGATACGGGAGAATATATCTGAGTGGAGAA
ACTGTACTATTGTCTCACCTGATGCTGGTGGAGCCAAGAGAGTGACCTCCATTGCAGACCGGTTGAATGT
GGATTTTGCTTTGATTCACAAGGAACGGAAGAAGGCCAATGAAGTAGACCGCATGGTACTAGTAGGAGAT
GTGAAGGATCGTGTGGCTATACTTGTGGATGACATGGCTGACACTTGCGGTACAATTTGTCATGCTGCTG
ACAAACTTCTCTCAGCTGGAGCTACCAGAGTTTATGCTATCTTGACGCATGGAATCTTCTCTGGCCCTGC
CATTTCTCGCATCAACAATGCATGCTTTGAAGCAGTAGTAGTTACCAATACCATACCTCAGGAAGACAAG
ATGAAACACTGCTCCAAAATACAGGTGATTGACATCTCTATGATCCTTGCAGAAGCCATCAGGAGAACCC
ACAATGGAGAATCTGTCTCCTACCTGTTCAGCCATGTTCCTTTGTAA

Translation (318 aa):
MSNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL
LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI
PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD
VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK
MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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