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Report for CCDS56958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56958.1 Public Mus musculus 14 Ppp1r3e 23 108 98 CCDS HistoryNCBI Gene:105651Re-query CCDS DB by CCDS ID:56958.1Re-query CCDS DB by GeneID:105651See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177403.1 ENSMUSP00000134894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177403.1Link to Ensembl Protein Viewer:ENSMUSP00000134894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177403Re-query CCDS DB by Protein ID:ENSMUSP00000134894
Original member Current member EBI ENSMUST00000168622.1 ENSMUSP00000134915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168622.1Link to Ensembl Protein Viewer:ENSMUSP00000134915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168622Re-query CCDS DB by Protein ID:ENSMUSP00000134915
Original member Current member NCBI NM_001167908.1 NP_001161380.1 Accepted alive Link to Nucleotide Sequence:NM_001167908.1Link to Protein Sequence:NP_001161380.1Re-query CCDS DB by Nucleotide ID:NM_001167908Re-query CCDS DB by Protein ID:NP_001161380Link to BLAST:NP_001161380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161380.1 279 Q8BRJ4 279 99.6416% 0 1

Chromosomal Locations for CCDS 56958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54876374 54876796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54876887 54877303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGTCCCACGAGCGGCCACCGCGCACGGATATACCCCGCAACCTGAGCTTTATAGCGGCATTGACCGAGC
GGGCGTACTACCGCAGCCAGCGGCCCAGCCTCGAGGAGGAGTCGGAGGAGGAGCCCGGGGAGGGCGGGAC
CCGGCCAGGCGCCCGCTCGCGGGCTCACGTTCCGGGTCGGGGGCGCAGGGCCCGCTCTGCGCCCGCGGGT
GGTGGCGGGGCGCGGACAGCCCGCAGCCGCAGCCCTGACACTCGCAAGAGAGTGCGTTTCGCCGACGCGC
TGGGGCTGGAGCTGGCCGTGGTCCGGCGCTTCCGCCCTGGGGAACCGCCCCGGGTGCCCCGCCACGTGCA
GGTGCAACTGCAGAGGGACGCCCTGCGCCACTTCGCGCCGTGCCCGCCGCGAGCCCGCGGCCTCCAGGAG
GCGCGCGTCGCCCTGGAGCCAGCCCTGGAGCCCGGCTTCGCCGCCCGGCTGCAGGCGCAGCGCATCTGCC
TGGAGCGCGCAGACGCGGGCCCTCTGGGCGTGGCCGGGAGCGCGCGCGTGCTGGACCTGGCCTACGAGAA
GCGCGTGAGCGTGCGCTGGAGCGCGGACGGCTGGCGCAGCCTGCGGGAATCGCCCGCCTCCTACGCGGGT
CCAGCTCCGTCCCCGCCGCGGGCTGACCGCTTCGCCTTCCGCCTGCCCGCACCTCCGGTCGGCGGAACGC
TGCTCTTCGCCCTTCGCTACCGGGTTACCGGCCGAGAGTTCTGGGATAACAACGGCGGCCGAGACTACGC
GCTCCTTGGGCCCGAGCATCCTGCCGGTGCCGGAGCCGCGGAGCCCCAGGGCTGGATCCATTTTATTTGA

Translation (279 aa):
MSHERPPRTDIPRNLSFIAALTERAYYRSQRPSLEEESEEEPGEGGTRPGARSRAHVPGRGRRARSAPAG
GGGARTARSRSPDTRKRVRFADALGLELAVVRRFRPGEPPRVPRHVQVQLQRDALRHFAPCPPRARGLQE
ARVALEPALEPGFAARLQAQRICLERADAGPLGVAGSARVLDLAYEKRVSVRWSADGWRSLRESPASYAG
PAPSPPRADRFAFRLPAPPVGGTLLFALRYRVTGREFWDNNGGRDYALLGPEHPAGAGAAEPQGWIHFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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