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Report for CCDS56977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56977.1 Public Mus musculus 15 C1qtnf3 23 108 98 CCDS HistoryNCBI Gene:81799Re-query CCDS DB by CCDS ID:56977.1Re-query CCDS DB by GeneID:81799See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56977.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110523.1 ENSMUSP00000106152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110523.1Link to Ensembl Protein Viewer:ENSMUSP00000106152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110523Re-query CCDS DB by Protein ID:ENSMUSP00000106152
Original member Current member NCBI NM_001204134.1 NP_001191063.1 Accepted alive Link to Nucleotide Sequence:NM_001204134.1Link to Protein Sequence:NP_001191063.1Re-query CCDS DB by Nucleotide ID:NM_001204134Re-query CCDS DB by Protein ID:NP_001191063Link to BLAST:NP_001191063.1

Chromosomal Locations for CCDS 56977.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10952454 10952756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10957957 10958068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10960628 10960782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10971981 10972110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10975591 10975690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10978516 10978675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGCTCGGGAGGCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTCCCATTTTGCCTGTGTCAAG
ATGAATACATGGAGGTGAGCAGAAGAGCTAATAAAGCGGTGGCCAGGATAGTGCAGAGCCACCAGCAGAC
TGGCCGTAGCGGCTCCAGGAGGGAGAAAGTGAGAGAGCAGAGCCAAGCTAAAACTGGGACTGTGGATAAT
AACACTTCTACAGACCTAAAACCCCTGAGACCAGAGGCGCTTCCGCACCCTGAGGTAGAGGACCTAGCCC
AGATCAACCCATTCTGGGGCCAGTCTCCACAAGCTGGAGGACTGCCCCCAGACTGCAGCAAGTGTTGCCA
TGGAGATTATGGATTTCGTGGTTACCAAGGGCCCCCTGGACCTCCAGGTCCTCCTGGCATTCCAGGAAAC
CATGGAAACAATGGGAACAATGGAGCTACTGGCCATGAAGGGGCCAAAGGTGAGAAAGGAGACAAAGGCG
ACCTAGGCCCTCGAGGAGAACGGGGGCAGCATGGCCCCAAAGGAGAGAAAGGCTACCCAGGGGTGCCACC
AGAACTGCAGATTGCATTCATGGCTTCTCTAGCAACTCACTTCAGCAATCAGAACAGTGGCATTATCTTC
AGCAGTGTTGAGACCAACATTGGAAACTTCTTCGATGTCATGACTGGGAGATTTGGGGCCCCCGTATCAG
GTGTGTATTTCTTCACCTTCAGCATGATGAAGCATGAGGACGTAGAGGAAGTGTATGTGTACCTTATGCA
CAACGGCAACACAGTCTTCAGCATGTACAGCTATGAAACAAAGGGAAAATCAGATACATCCAGCAACCAT
GCAGTGCTGAAGTTGGCCAAAGGAGATGAAGTCTGGCTAAGAATGGGCAACGGTGCCCTCCACGGGGACC
ACCAGCGCTTCTCCACCTTCGCAGGCTTTCTGCTCTTTGAAACTAAGTGA

Translation (319 aa):
MLGRQRIWWHLLPLLFLPFCLCQDEYMEVSRRANKAVARIVQSHQQTGRSGSRREKVREQSQAKTGTVDN
NTSTDLKPLRPEALPHPEVEDLAQINPFWGQSPQAGGLPPDCSKCCHGDYGFRGYQGPPGPPGPPGIPGN
HGNNGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKGEKGYPGVPPELQIAFMASLATHFSNQNSGIIF
SSVETNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFSMYSYETKGKSDTSSNH
AVLKLAKGDEVWLRMGNGALHGDHQRFSTFAGFLLFETK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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