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Report for CCDS57079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57079.1 Public Mus musculus 17 Trim15 23 108 98 CCDS HistoryNCBI Gene:69097Re-query CCDS DB by CCDS ID:57079.1Re-query CCDS DB by GeneID:69097See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174195.7 ENSMUSP00000133953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174195.7Link to Ensembl Protein Viewer:ENSMUSP00000133953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174195Re-query CCDS DB by Protein ID:ENSMUSP00000133953
Original member Current member NCBI NM_001177872.1 NP_001171343.1 Accepted alive Link to Nucleotide Sequence:NM_001177872.1Link to Protein Sequence:NP_001171343.1Re-query CCDS DB by Nucleotide ID:NM_001177872Re-query CCDS DB by Protein ID:NP_001171343Link to BLAST:NP_001171343.1

Chromosomal Locations for CCDS 57079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36861483 36861496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36862327 36862359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36862783 36862898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36864249 36864271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36864961 36865191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36866305 36866400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36866736 36867101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCCCTCAACCCGGTCCCTGCGGGGACTTCACCAAGTAGCCTGTCCTGTCTGCACCCGACCCTTGCAGG
ATGCGGTGACCACAGCCTGCGGACACACTGTCTGCCTACTCTGCCTCCCGCGCACCCCAATGGGAGCCCA
GCTGCTGTGCCCTCTCTGTCAGGGGGCAGAAGAGGAGAAAATCCAGGCCGCAGTGGCCCCGGTGTCCCTA
GGTCCCCTGAGCGAGACCTACTGTGAAGAGCACGGAGAGAAGATCTATTTCTTCTGTAAGACAGACGCGG
AGCTGCTCTGCGTGTTCTGCAGGGAGGGCCCCGCCCACCAGGCACACACTGTGGGGTTCCTGGATGAAGC
CATCCAACCCTACAGGGATCGTCTCAGGAGTCGGTTAGAAGCTCTAAGAATGGAGAGGGACAAGATAGAA
GATAGGAAATGTCAAGAAGACCAGAAGCTCCAGGAGGTTCTGATGCAGGTTGAAAGCAAAAAGCATCAGG
TAGAAGCTGCTTTTGAAAGGCTGAAGCGGGAGCTTGTGGACCAGAGATGCCTCCTGCTGAACAGGCTGGA
GGAACTAGAACGGCAGATCTGCAAGGAGAGGGAAGAGTACATCAGCAAAGTCTCCCAGGAGGTCGACCGG
CTGAGTACCCAGGTGGAGGAGCTAGAGGAGAAGTGTCAGCAACCAGCAAGTGAGCTTCTGCAAGATGCCA
GACTCAATCAGAGCAGGTACGAGCTGAAGACTTTTGTGAGCCCAGAGGCCATTTCCTCTGATCTTGTCAA
GAAGATCCGAAACCTCCACAGGAAAATACTTAGCCTCCCAAAGATGATGAGGACATTTTCAGAAAACTTG
ATGCAGCATCTGGAGACAGATTCAGAAACAGAAGCCTAG

Translation (292 aa):
MPSTRSLRGLHQVACPVCTRPLQDAVTTACGHTVCLLCLPRTPMGAQLLCPLCQGAEEEKIQAAVAPVSL
GPLSETYCEEHGEKIYFFCKTDAELLCVFCREGPAHQAHTVGFLDEAIQPYRDRLRSRLEALRMERDKIE
DRKCQEDQKLQEVLMQVESKKHQVEAAFERLKRELVDQRCLLLNRLEELERQICKEREEYISKVSQEVDR
LSTQVEELEEKCQQPASELLQDARLNQSRYELKTFVSPEAISSDLVKKIRNLHRKILSLPKMMRTFSENL
MQHLETDSETEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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