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Report for CCDS57146.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
57146.1 |
Public |
Mus musculus |
19 |
Cfap43 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:100048534](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:57146.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:100048534](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 57146.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000160247.2 |
ENSMUSP00000125007.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000160247.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125007.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000160247](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125007](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_027559.2 |
NP_081835.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_027559.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_081835.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_027559](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_081835](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_081835.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_081835.2 |
1682 |
E9Q7R9 |
1682 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 57146.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5049 nt): ATGTCGCAAGACCCGGAGCGCGACGACGTCACTGCCTCTGCCACTGCCTCTGCCTCAGCCTCAGCCCCTG CCTCTGCCTCTGCCCACTACTCCGGATCCTCCCTGTCGGTGAGATGGGTGCAAGGATTCCCTAGTCAGAA CGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAA ACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTG AAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAG AAAAAACAAGTTAAAAGGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTAC CTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTGGAACTGGGAAGCCAGTGCCATCTTGT GCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTG TTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATA AGGTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTC TGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGC AGAGACTTTCAGGCCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCA AGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCG TGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGGATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTA CCAAAAGGACGGCATACTCGCTTCTGGAATTGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAG TACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAA TGTTACTGATTCAAACAGACAAGGGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCTCTTGATAA ACTCCTCGATGCCTGCGATGGGAAAGTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCC TGAAGACTCAAGCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGG CTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAG TCACCAGTGAAGATAGTGACGTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACA TCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTGAGACGGGCAAGGACAT CCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCA GATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAGTGGTTCCTGAAAACT TTTCTGATGAACGAGGAAGGCTGAAAGACGATTTAACCCACAAGTACCTGTACGAGGTGGAGCACACTCT GTCCTCTGCAGTGCTGGGCTTCACAGGCAGCAAAATCTTTGGCTTCTGCAGCCAGGTGCCCTACATCTGC AGCTATGTAATGCCCGTAAAGGAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCA AACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGG AATTCTCTGTATCCGAGATATGTTCAGTATGGAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGG CGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACA CCCTTGTCTGCCTCAAATGGAAGCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCC GCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACG AATGAGCAGCAAGAAGAGACAACTGAATCCCAAAAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAG TCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGGCCATCAAAAAGGAGGTGAGGAT TTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTTATTGCAATGATGATG GAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGC TGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAGATAAGGAAAGATGTGGAGATGCACAACTT GGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCT CTAAAGTGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTAC AGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAGCTCCGGAAAGAGATTGT GGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAA GAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGG ACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCT AAAGGATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAG ATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAG AAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGA GATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAA ATGGAACGGTTGCAGCAAGCACGGATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTG TTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGGTGATCCCTCAACCACCTTTCATGGCGAAAGCTGA TGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAA GAGAGAGACAAGTACAGAAAGTCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCA CGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCA GGAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAG TTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAAACCAAGACTGCAGAAGCCATCCAGAAGGCGA GAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAAATTCTGGATCGAAG CTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGG CCAAGGGTTCACAAACAGAAAACACAGGCAGATGTGACCAGTCTTGTTCCTTATGGAGAGCGACCAGGAT CTGCCAAGTTAAATAAGGAAAACTTAGCCCAGCTAATGAAATCCATGGATGAGTTGGACAATATCAATAA CATGCCAGAAGGCTTGGACCCCTCTGTCTGGGAACATTTCTGCTCAACTAGACGGGCAAAAGTGGAAAAT GAATACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAG AGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCGATTACAGGATGAGAAAGT GAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAG TTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTC GGACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGAT TGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATG CTCTTCTTCTCACGAGACCGGCAGAAGTACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGA TTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAGACTCATAAGAAGAATGTAGAAAACTGCAAAAA GCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAGGGTCTAAGCTGACCTGTG AGAAGATTGCTAGAGAACGCTACGACAACCAGCTGAAGCAGCAGAAGCTGTTGAACATCTCCAAGCAGCA AGCTGAGCAGATCTCAATCCTGCAGGCTGAAGTTGAAAGACTCAGGATGAAGACATTCCCTGCTCTCATC CCAATGTAG
Translation (1682 aa): MSQDPERDDVTASATASASASAPASASAHYSGSSLSVRWVQGFPSQNVHFVNDQTICYPSGNFVIFINLE TKKKTVLQCINGIVGVMATNVPSEVVAFSDRRFKPVIYIYSFPSLTRKNKLKGDILLDYTLLCFSYCGTY LASYSSLPEFELALWNWEASAILCKKSNPGMDVSQMSFNPMNWHQMCLSSSSAMSVWTIERSNQEHHFRI RSVKLPLEDATFLNEPDMLFPTTLPKDLIYGPVLPLSAIAGLVGEEAETFRPKDDIYPLLHPTMHCWTPS SDLYVGCEEGHLLMINTETLKVTVLQKAEEFPLPDGAPLINPLTLVYQKDGILASGIDGVIYSFIIKDSK YQVKTFLEFDGPVTHLVFSPSYKMLLIQTDKGSVYIYTFGAEMPLDKLLDACDGKVQAVSFITPGTKYFL TLTSSGEVSTVSLEDCNCTSRIFLKTQATALACSPSSPTAAVGTVDGYVYFLNILDVESPQMIHQAFLSQ SPVKIVTYDQRGIFLLVGTEEGNIFVIDARPSKSFQIFGFTETGKDILQISTVSVMESDVVEVLVLYPLP DMGRSRLEYFTLPVMLPEVVPENFSDERGRLKDDLTHKYLYEVEHTLSSAVLGFTGSKIFGFCSQVPYIC SYVMPVKEHTGVLVLKPHQKVQSKQYGSGTIYLSSHGLWLMTIAKCGILCIRDMFSMETFVRCRSHSHQG RGIQNMKMSLDGQHILVNGKDDNTLVCLKWKRLGANIASEIFEHSRPLVLHLSQTVESESVYLALSREST NEQQEETTESQKHLNSDSSEEEAVIDHKMIPWIQQKMEEAIKKEVRIFSPRRKEIKRGIKELAQVIAMMM EENEKVDIIAKLDEQEFCLDADELERLHDECEEEVAKIRKDVEMHNLAQSYLTELIKEECWNSMAVKGRA LKCFHIPYVVDNFPMKERTEEELQELSKVMQQKKTEIECLKLRKEIVEVQATTTIAKKHHEEEEEEEEDE ERTIKTTSLPNYLLGSLSTDFGADTSLLTSQLDLHSREEKINQIILLKDIIYNIKRNFNSEFDAAYKQKE IEIARVKEKNVRIAEIISDLELEETVWQPVFEDSEKPERALVVEDDEISFKKYIAPWQRAKIKEVVSTYE MERLQQARISDERQRGLMDMMGGVLEVKKEDILRMVIPQPPFMAKADALWSEDERKQFKEYEKKVKELNE ERDKYRKSLEAELKKLQNSIQESTQNFDDHLKRLFERRVKAEMVINQEELKINNIIFSLLLDEELSSREQ FLNNYLLKKQEEKTKTAEAIQKAREDLDVFKEHHDMLVAEDKILDRSFKKEFSDILGHQVDVLYKLFKRR PRVHKQKTQADVTSLVPYGERPGSAKLNKENLAQLMKSMDELDNINNMPEGLDPSVWEHFCSTRRAKVEN EYKVKQKAACLLEMTTFLRKRMEEDDVVHHEIEKVFHELIRLQDEKVRFQVNLTVQILLKQGQVELENFQ LMLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKEVHKGIYQIEWEHKKMEMEMEDLNQRAWDIEM LFFSRDRQKYLNEPNYENVIAIQIGIMEQTISVIDKTHKKNVENCKKLLKKLGKYSNQKDVANYTLSCNL REELVAVSERQDICNEIGSKLTCEKIARERYDNQLKQQKLLNISKQQAEQISILQAEVERLRMKTFPALI PM
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