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Report for CCDS57249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57249.1 Public Mus musculus 3 Tspan2 23 108 98 CCDS HistoryNCBI Gene:70747Re-query CCDS DB by CCDS ID:57249.1Re-query CCDS DB by GeneID:70747See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119902.5 ENSMUSP00000113803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119902.5Link to Ensembl Protein Viewer:ENSMUSP00000113803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119902Re-query CCDS DB by Protein ID:ENSMUSP00000113803
Original member Current member NCBI NM_001243132.1 NP_001230061.1 Accepted alive Link to Nucleotide Sequence:NM_001243132.1Link to Protein Sequence:NP_001230061.1Re-query CCDS DB by Nucleotide ID:NM_001243132Re-query CCDS DB by Protein ID:NP_001230061Link to BLAST:NP_001230061.1

Chromosomal Locations for CCDS 57249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102735259 102735315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102749758 102749860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102757293 102757390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102758157 102758231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102759310 102759408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102760897 102760968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102765185 102765268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102768877 102768942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCTCCCCCGAAAGAAGCCATCATCTTCGGCGGCATCGCCCGGCGGGTGGCGCCAGCTAGCCGGATCAG
CCGTTATTGCATTTGGACTATGGTTTCGATTTGGAGGTACCATGAAGGATTTATCATCAGAGGACAAGTC
CCCAGAGTATTTCTATGTGGGGCTGTATGTGCTGGTTGGTGCTGGGGCCCTGATGATGACTGTGGGTTTC
TTCGGGTGCTGTGGAGCCATGCGTGAGTCACAGTGTGTGCTCGGATCATTTTTTACCTGTCTGTTGGTGA
TATTTGCTGCTGAAGTAACCACTGGAGTATTTGCATTTATAGGCAAGGATGTAGCTATACGACATGTACA
GAGCATGTATGAGGAGGCCTACAGCGACTACCTTAAAGACAGGGCAAGAGGAAATGGAACTCTCATTACC
TTCCACTCAGCATTTCAGTGCTGTGGAAAAGAAAGCTCTGAGCAAGTCCAGCCCACGTGTCCAAAGGAGC
TCCCAGGCCACAAGAATTGCATCGACAAAATTGAAACCGTAATCAGTGCTAAACTGCAGCTCATTGGAAT
TGTTGGTATTGGGATTGCGGGTCTCACGATCTTTGGCATGATATTCAGCATGGTGCTTTGCTGTGCAATA
CGGAACTCACGCGATGTGATCTGA

Translation (217 aa):
MLPRKKPSSSAASPGGWRQLAGSAVIAFGLWFRFGGTMKDLSSEDKSPEYFYVGLYVLVGAGALMMTVGF
FGCCGAMRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKDVAIRHVQSMYEEAYSDYLKDRARGNGTLIT
FHSAFQCCGKESSEQVQPTCPKELPGHKNCIDKIETVISAKLQLIGIVGIGIAGLTIFGMIFSMVLCCAI
RNSRDVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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