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Report for CCDS57332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57332.1 Public Mus musculus 5 Dpp6 23 108 98 CCDS HistoryNCBI Gene:13483Re-query CCDS DB by CCDS ID:57332.1Re-query CCDS DB by GeneID:13483See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120555.7 ENSMUSP00000113849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120555.7Link to Ensembl Protein Viewer:ENSMUSP00000113849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120555Re-query CCDS DB by Protein ID:ENSMUSP00000113849
Original member Current member NCBI NM_001198886.1 NP_001185815.1 Accepted alive Link to Nucleotide Sequence:NM_001198886.1Link to Protein Sequence:NP_001185815.1Re-query CCDS DB by Nucleotide ID:NM_001198886Re-query CCDS DB by Protein ID:NP_001185815Link to BLAST:NP_001185815.1

Chromosomal Locations for CCDS 57332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 26905238 26905288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27382755 27382869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27398914 27399012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27451188 27451282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27469411 27469485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27537982 27538034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27557552 27557633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27598802 27598922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27631379 27631533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27634509 27634606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27652177 27652300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27653700 27653738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27661587 27661694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27663430 27663521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27664713 27664760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27666410 27666528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27696850 27696897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27709450 27709548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27712608 27712677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27714372 27714566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27718454 27718508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27721045 27721156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27722673 27722731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27723372 27723444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27723541 27723614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27725605 27725751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGAAGGAAAAGGCCATGATCAAGACCGCTAAAATGCAGGGCAACGTGATGGAGCTGGTGGGGAGTAATC
CTCCACAGAGGAACTGGAAAGGAATCGCCATTGCGCTGCTCGTCATCCTTGTCATCTGCTCTCTGATTGT
CACCTCAGTCATCCTGTTGACCCCAGCGGAAGATACCAGTCTGTCTCAGAAGAAAAAAGTGACTGTGGAA
GATCTCTTCAGTGAAGACTTCAAAATCCATGACCCAGAGGCAAAGTGGATAAGCAATAAGGAATTCATCT
ACAGAGAACGGAAAGGGAGTGTCATACTGCGGAATGTTGAAACAAATAATTCCACGGTGTTAATAGAAGG
CAAAAAAATTGAATCCTTGAGAGCCATCAGATATGAAATATCCCCAGATAAAGAGTATGTGCTGTTCTCC
TATAATGTGGAGCCGGTATACCAACACTCCCACACTGGATATTATGTTCTGAGCAAAATTCCTCATGGGG
ACCCTCAGAGTCTGGACCCACCAGAAGTCAGCAACGCAAAGCTTCAGTATGCAGGGTGGGGCCCAAAAGG
CCAGCAGCTGATATTTATCTTTGAGAACAACATCTACTACTGTGCACACGTTGGAAAGCAGGCAATTCGA
GTGGTCTCTACAGGGAAGGAGGGCGTGATCTACAATGGCCTCAGTGACTGGCTGTATGAAGAGGAGATTC
TGAAGAGCCACATCGCTCATTGGTGGTCACCAGATGGTACAAGGCTCGCCTATGCCACCATCAACGACTC
CCGGGTTCCACTTATGGAGCTGCCAACGTACACAGGCTCTGTCTACCCCACTGTGAAGCCCTACCACTAT
CCTAAGGCTGGCAGTGAAAACCCCAGCATCTCGCTCCATGTCATCGGCTTGAATGGACCCACCCACGACC
TGGAGATGATGCCACCTGATGACCCGCGCATGAGGGAATATTACATCACCATGGTGAAATGGGCCACCAG
CACCAAGGTCGCTGTGACCTGGCTGAACCGGGCCCAGAATGTGTCAATCCTGACCCTCTGTGATGCCACC
ACGGGTGTCTGCACTAAGAAACATGAAGATGAAAGCGAAGCCTGGCTCCACAGACAGAATGAAGAGCCTG
TGTTCTCCAAAGATGGCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGGGAGGCCGGGGTAAATTCTA
CCATATCACCGTATCATCATCCCAGCCCAACAGCAGCAATGACAACATCCAGTCTATCACCTCTGGAGAC
TGGGATGTGACCAAGATCCTGTCCTATGATGAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACC
TGCCACGGAGACGACATCTCTACAGTGCCAACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGA
CTTGGTGGAGAACTGCACCTATGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTTCCTGCTCAAGTGT
GAAGGCCCTGGCGTACCCACTGTTACTGTGCATAACACCACGGACAAGAGAAGAATGTTTGACTTGGAAG
CAAATGAGGAAGTTCAGAAGGCTATCAACGACCGGCAGATGCCGAAGATTGAATATCGAAAAATTGAAGT
AGAAGATTACAGCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACCGACACAGCTCACTACCCCTTA
TTGCTCGTGGTGGATGGTACCCCAGGGAGTCAGAGCGTGACAGAGAGGTTTGAGGTGACCTGGGAAACAG
TGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTCCAGGGAACCAA
GCTCCTACAGGAAGTACGGAGGCGGCTAGGCTTCCTGGAGGAGAAGGACCAGATGGAAGCTGTAAGAACT
ATGCTGAAGGAGCAGTATATTGACAAGACTCGGGTAGCTGTGTTTGGGAAGGATTATGGTGGGTACCTGA
GCACTTACATCCTCCCAGCCAAGGGAGAAAATCAAGGTCAGACTTTCACCTGCGGCTCTGCGCTCTCTCC
AATAACAGACTTCAAACTCTATGCCTCTGCATTTTCTGAGAGGTACCTTGGCCTCCATGGACTCGACAAC
AGAGCGTATGAGATGACCAAGCTGGCACACCGAGTGTCAGCACTGGAGGACCAGCAGTTCCTGATCATCC
ACGCCACGGCCGATGAAAAAATCCATTTCCAGCACACAGCTGAGCTCATCACGCAGCTGATCAAGGGAAA
GGCCAATTACAGCTTACAGATCTACCCAGATGAGAGTCACTACTTCCACAGCGTGGCGCTCAAGCAGCAC
CTGTCCAGGTCCATCATCGGCTTCTTTGTGGAATGTTTCAGAGTCCAAGATAAGCTACCAACAGCCACAG
CAAAAGAGGAGGAGGAGGAGGACTAA

Translation (801 aa):
MKEKAMIKTAKMQGNVMELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDTSLSQKKKVTVE
DLFSEDFKIHDPEAKWISNKEFIYRERKGSVILRNVETNNSTVLIEGKKIESLRAIRYEISPDKEYVLFS
YNVEPVYQHSHTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR
VVSTGKEGVIYNGLSDWLYEEEILKSHIAHWWSPDGTRLAYATINDSRVPLMELPTYTGSVYPTVKPYHY
PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT
TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFVRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD
WDVTKILSYDEKRNKIYFLSTEDLPRRRHLYSANTVDDFNRQCLSCDLVENCTYVSASFSHNMDFFLLKC
EGPGVPTVTVHNTTDKRRMFDLEANEEVQKAINDRQMPKIEYRKIEVEDYSLPMQILKPATFTDTAHYPL
LLVVDGTPGSQSVTERFEVTWETVLVSSHGAVVVKCDGRGSGFQGTKLLQEVRRRLGFLEEKDQMEAVRT
MLKEQYIDKTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDN
RAYEMTKLAHRVSALEDQQFLIIHATADEKIHFQHTAELITQLIKGKANYSLQIYPDESHYFHSVALKQH
LSRSIIGFFVECFRVQDKLPTATAKEEEEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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