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Report for CCDS57367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57367.1 Public Mus musculus 5 Spp1 23 108 98 CCDS HistoryNCBI Gene:20750Re-query CCDS DB by CCDS ID:57367.1Re-query CCDS DB by GeneID:20750See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086833.12 ENSMUSP00000084043.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086833.12Link to Ensembl Protein Viewer:ENSMUSP00000084043.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086833Re-query CCDS DB by Protein ID:ENSMUSP00000084043
Original member Current member NCBI NM_001204203.1 NP_001191132.1 Accepted alive Link to Nucleotide Sequence:NM_001204203.1Link to Protein Sequence:NP_001191132.1Re-query CCDS DB by Nucleotide ID:NM_001204203Re-query CCDS DB by Protein ID:NP_001191132Link to BLAST:NP_001191132.1

Chromosomal Locations for CCDS 57367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104436389 104436442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104436541 104436576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104436901 104436903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104437655 104437735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104438226 104438267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104439265 104439546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104440229 104440618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAGATTGGCAGTGATTTGCTTTTGCCTGTTTGGCATTGCCTCCTCCCTCCCGGTGAAAGTGACTGATT
CTGGCAGCTCAGAGGAGAAGAAGCTTTACAGCCTGCACCCAGATCCTATAGCCACATGGCTGGTGCCTGA
CCCATCTCAGAAGCAGAATCTCCTTGCGCCACAGAATGCTGTGTCCTCTGAAGAAAAGGATGACTTTAAG
CAAGAAACTCTTCCAAGCAATTCCAATGAAAGCCATGACCACATGGACGACGATGATGACGATGATGATG
ACGATGGAGACCATGCAGAGAGCGAGGATTCTGTGGACTCGGATGAATCTGACGAATCTCACCATTCGGA
TGAGTCTGATGAGACCGTCACTGCTAGTACACAAGCAGACACTTTCACTCCAATCGTCCCTACAGTCGAT
GTCCCCAACGGCCGAGGTGATAGCTTGGCTTATGGACTGAGGTCAAAGTCTAGGAGTTTCCAGGTTTCTG
ATGAACAGTATCCTGATGCCACAGATGAGGACCTCACCTCTCACATGAAGAGCGGTGAGTCTAAGGAGTC
CCTCGATGTCATCCCTGTTGCCCAGCTTCTGAGCATGCCCTCTGATCAGGACAACAACGGAAAGGGCAGC
CATGAGTCAAGTCAGCTGGATGAACCAAGTCTGGAAACACACAGACTTGAGCATTCCAAAGAGAGCCAGG
AGAGTGCCGATCAGTCGGATGTGATCGATAGTCAAGCAAGTTCCAAAGCCAGCCTGGAACATCAGAGCCA
CAAGTTTCACAGCCACAAGGACAAGCTAGTCCTAGACCCTAAGAGTAAGGAAGATGATAGGTATCTGAAA
TTCCGAATTTCTCATGAATTAGAGAGTTCATCTTCTGAGGTCAACTAA

Translation (295 aa):
MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNAVSSEEKDDFK
QETLPSNSNESHDHMDDDDDDDDDDGDHAESEDSVDSDESDESHHSDESDETVTASTQADTFTPIVPTVD
VPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSMPSDQDNNGKGS
HESSQLDEPSLETHRLEHSKESQESADQSDVIDSQASSKASLEHQSHKFHSHKDKLVLDPKSKEDDRYLK
FRISHELESSSSEVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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